Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PCNA.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29570 475 / 6e-172 ATPCNA2, PCNA2 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) AT1G07370 471 / 1e-170 ATPCNA1, PCNA1 proliferating cellular nuclear antigen 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G040900 [exp] 474 / 1e-171 AT2G29570 484 / 9e-176 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005874 [exp] 366 / 4e-129 AT2G29570 389 / 3e-138 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) Lus10001197 [exp] 350 / 4e-123 AT2G29570 343 / 1e-120 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) Lus10038360 [exp] 112 / 2e-31 AT2G29570 109 / 9e-31 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) Lus10038359 [exp] 0 / 1 AT2G29570 70 / 3e-21 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0060 [poplar] [flax] DNA_clamp PF04139 [poplar] [flax] Rad9 Rad9
Representative CDS sequence Show only first row Show all	>Potri.001G247700.1 pacid=42789878 polypeptide=Potri.001G247700.1.p locus=Potri.001G247700 ID=Potri.001G247700.1.v4.1 annot-version=v4.1 ATGTTGGAGCTAAGGCTGGTACAAGGGTCTCTTCTGAAGAAAGTTTTAGAGGCAATCAAGGACCTGGTCAACGATGCAAACTTTGACTGCTCGTCCTCTG GGTTCTCTCTCCAGGCCATGGATTCCAGCCACGTTGCCCTGGTGGCTCTACTCCTCAGATCGGAGGGTTTCGAACACTACCGCTGTGACCGTAACATGTC AATGGGCATGAATCTTGGTAACATGTCTAAGATGCTGAAGTGTGCTGGAAACGATGACATCATCACCATTAAAGGCGATGATGGTAGCGATACAGTAACT TTCATGTTTGAAAGTCCCACACAAGACAAAATTGCTGATTTTGAGATGAAACTGATGGACATCGATAGTGAGCACCTAGGAATCCCGGAGGCGGAATACC ATGCTATTGTTACGATGCCTTCAGCCGAGTTTTCAAGGATTTGTAAAGATCTTTCTAGCATTGGTGATACAGTTGTGATCTCCGTGACAAAGGAGGGTGT TAAGTTTTCTACAAGAGGTGATATTGGAACTGCAAATATTGTCCTCAGGCAAAACACCACAGTTGATAAGCCGGAAGATGCCACTGTCATTGAGATGAAC GAGCCAGTGTCATTGACATTTGCACTGAGGTACATGAACTCCTTCACGAAGGCAACCCCATTGTCAAACACAGTTAAAATCAGCTTGTCTTCAGAGCTAC CTGTTGTGGTTGAGTACAAAATCGCTGAAATGGGTTACGTCAGATACTACTTGGCTCCAAAGATAGAAGAGGACGAGGATGAGAATGAGACTAAACCTCA AGTTTAA
AA sequence Show only first row Show all	>Potri.001G247700.1 pacid=42789878 polypeptide=Potri.001G247700.1.p locus=Potri.001G247700 ID=Potri.001G247700.1.v4.1 annot-version=v4.1 MLELRLVQGSLLKKVLEAIKDLVNDANFDCSSSGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNMSMGMNLGNMSKMLKCAGNDDIITIKGDDGSDTVT FMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVTMPSAEFSRICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEDATVIEMN EPVSLTFALRYMNSFTKATPLSNTVKISLSSELPVVVEYKIAEMGYVRYYLAPKIEEDEDENETKPQV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Potri.001G247700 [exp]	0	1	PCNA.2
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Potri.012G075300 [exp]	1.41	0.9273	DEL2,DEL1.2
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Potri.018G087600 [exp]	3.46	0.8978	B5.1
AT5G60150			unknown protein		Potri.005G131500 [exp]	4.00	0.8977
AT1G06660		JASON	JASON, unknown protein		Potri.002G057000 [exp]	6.00	0.8900
AT1G45000			AAA-type ATPase family protein...		Potri.004G158600 [exp]	15.09	0.8619
AT5G59850			Ribosomal protein S8 family pr...		Potri.003G114800 [exp]	15.23	0.9058	RPS15.1
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Potri.011G083700 [exp]	20.12	0.8762
AT4G33945			ARM repeat superfamily protein...		Potri.009G106100 [exp]	21.90	0.8830
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.011G162000 [exp]	22.29	0.8926	Pt-FAH1.1
AT3G54750			unknown protein		Potri.016G065600 [exp]	23.23	0.8805

Compare expression of checked genes

Potri.001G247700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.