Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07350 125 / 2e-35 SR45a serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G35785 114 / 6e-30 RNA-binding (RRM/RBD/RNP motifs) family protein AT3G52380 71 / 1e-13 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT5G54580 60 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G04280 61 / 2e-10 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT5G06210 57 / 6e-10 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13860 56 / 7e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 54 / 2e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G73530 56 / 3e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 57 / 4e-09 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041700 [exp] 165 / 9e-48 AT4G35785 139 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.003G130301 [exp] 130 / 3e-36 AT4G35785 145 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.005G105700 [exp] 109 / 7e-28 AT4G35785 158 / 4e-48 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G101500 [exp] 97 / 3e-24 AT4G35785 97 / 1e-25 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.011G130300 [exp] 63 / 9e-12 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 62 / 3e-11 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 61 / 4e-11 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G086500 [exp] 61 / 3e-10 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 60 / 6e-10 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040705 [exp] 138 / 2e-37 AT1G07350 163 / 2e-46 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018202 [exp] 137 / 2e-36 AT1G07350 145 / 1e-41 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017507 [exp] 117 / 4e-31 AT4G35785 123 / 4e-35 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10028400 [exp] 112 / 2e-29 AT4G35785 181 / 2e-57 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10041854 [exp] 112 / 1e-28 AT4G35785 179 / 6e-56 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10028776 [exp] 107 / 3e-27 AT4G35785 127 / 5e-36 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040854 [exp] 62 / 3e-12 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029372 [exp] 64 / 5e-11 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10005891 [exp] 63 / 5e-11 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1) Lus10016174 [exp] 63 / 6e-11 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G248100.2 pacid=42789389 polypeptide=Potri.001G248100.2.p locus=Potri.001G248100 ID=Potri.001G248100.2.v4.1 annot-version=v4.1 ATGTCGTACTCCAGAAGGTCGAGGTATTCTCTTTCGCCTTCCCCATACAGGCGAGACAGCAGGTCCATATCAAGGTCAAGGTCCGGAAGTAGGTCAAGGA GCTCATCAAGGGACGTGGAGAATCCTGGTAACAATTTGTATGTGACAGGGTTGTCACCACGTATAACCAAGAAGGAACTTGAGAAGCATTTTGCTGCGGA AGGAACGGTGATTGATGTTCATCTTGTCGTAGATCCGTTGACAAGAGAGTCTCGAGGATTTGGGTTTGTTACTATGTCTGCTGTTGAGGAGGCCGATCGT TGTATCAAGTATTTGGACCGCTCTGTTCTTGGGGGTCGTGTCATTACAGTGGAGAAGGCTAAGCGGAGGAGAGGACGAACTCCTACTCCTGGGAGGTATT TGGGGCTGAGAACAATACGTGGTGGTGGTGGTGGTGGTGTGCATCGCTGGACGCCTAGTCCTTCGCCTCGACGATCTCCTAGTTACTCTCCTTATCGGAG GAGCTGGAGTCGGTCTCCTCGTTATTCATCTGAACGTAGCAGGAGCAGGTCCTGCTCCCCTCGCAACCGCCGTCGACGGTCCTACTCCCGATCTCGATCC CCATACCGTAGGTCCCCTGTCAGCAGGCGTGACAGGTCCAACTCACCTTATTACTTGAGGCGTCGCTCACCAGATGACAGATACTATAGAAGACACCGAT ATCGCTCTGTATCTCGCAGCCCTGCTACACGTAGGGCTCAGAGAAGTTCAAGGAGGAGCTATTCGAGAAGCGTTTCCCCAAGACCAAGAAGGAGCTCAAG GAGGAGCTGTTCGCGCAGTGTTTCCCCGGCACCAAGGAGGAGCTATTCACGCAGCATGTCCCCCGCACCGAGGAGGAGGTCAAGGAGAAGTTATTCTAGA AGTGTTTCACCAAGACCAAGGAAGTACTCAAGGAGGAGTGGACATTCTCGAGACAGCTACTCTAGGAGCCACAGTGCAAGTCCAACTTCCAGATCTGTTT CAAGATCTGTCACCCCAAGCTCGGGTTCTCCATCTCATTGA
AA sequence Show only first row Show all	>Potri.001G248100.2 pacid=42789389 polypeptide=Potri.001G248100.2.p locus=Potri.001G248100 ID=Potri.001G248100.2.v4.1 annot-version=v4.1 MSYSRRSRYSLSPSPYRRDSRSISRSRSGSRSRSSSRDVENPGNNLYVTGLSPRITKKELEKHFAAEGTVIDVHLVVDPLTRESRGFGFVTMSAVEEADR CIKYLDRSVLGGRVITVEKAKRRRGRTPTPGRYLGLRTIRGGGGGGVHRWTPSPSPRRSPSYSPYRRSWSRSPRYSSERSRSRSCSPRNRRRRSYSRSRS PYRRSPVSRRDRSNSPYYLRRRSPDDRYYRRHRYRSVSRSPATRRAQRSSRRSYSRSVSPRPRRSSRRSCSRSVSPAPRRSYSRSMSPAPRRRSRRSYSR SVSPRPRKYSRRSGHSRDSYSRSHSASPTSRSVSRSVTPSSGSPSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07350		SR45a	serine/arginine rich-like prot...		Potri.001G248100 [exp]	0	1
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.001G108100 [exp]	1.00	0.9142	Pt-HSF6.1
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Potri.006G197000 [exp]	1.41	0.9037
AT2G23780			RING/U-box superfamily protein...		Potri.005G127900 [exp]	3.74	0.8585
					Potri.008G195401 [exp]	4.47	0.8840
AT5G01350			unknown protein		Potri.016G118800 [exp]	6.16	0.7848
AT5G16110			unknown protein		Potri.017G114700 [exp]	7.34	0.7673
					Potri.009G092750 [exp]	7.74	0.8653
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Potri.010G201500 [exp]	8.48	0.8461
					Potri.010G182150 [exp]	8.94	0.8419
AT3G45430			Concanavalin A-like lectin pro...		Potri.009G035601 [exp]	9.89	0.8067

Compare expression of checked genes

Potri.001G248100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.