Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46980 674 / 0 PHT4;3 phosphate transporter 4;3 (.1.2.3) AT2G38060 460 / 6e-158 PHT4;2 phosphate transporter 4;2 (.1) AT4G00370 318 / 2e-102 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT2G29650 298 / 8e-95 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT5G20380 217 / 7e-64 PHT4;5 phosphate transporter 4;5 (.1) AT5G44370 178 / 2e-50 PHT4;6 phosphate transporter 4;6 (.1) AT4G25220 42 / 0.001 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111000 [exp] 466 / 2e-160 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.009G043800 [exp] 312 / 3e-100 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.014G085700 [exp] 311 / 3e-99 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.001G249800 [exp] 306 / 4e-98 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.006G062300 [exp] 219 / 2e-64 AT5G20380 636 / 0.0 phosphate transporter 4;5 (.1) Potri.018G121600 [exp] 210 / 3e-61 AT5G20380 654 / 0.0 phosphate transporter 4;5 (.1) Potri.009G168200 [exp] 170 / 4e-47 AT5G44370 676 / 0.0 phosphate transporter 4;6 (.1) Potri.002G160650 [exp] 75 / 2e-15 AT4G00370 190 / 3e-58 anion transporter 2, Major facilitator superfamily protein (.1) Potri.007G091800 [exp] 47 / 3e-05 AT5G10190 643 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018203 [exp] 707 / 0 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10040703 [exp] 697 / 0 AT3G46980 673 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10035532 [exp] 449 / 9e-154 AT2G38060 669 / 0.0 phosphate transporter 4;2 (.1) Lus10027761 [exp] 419 / 1e-143 AT2G38060 619 / 0.0 phosphate transporter 4;2 (.1) Lus10018218 [exp] 316 / 1e-101 AT2G29650 761 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10040686 [exp] 318 / 2e-99 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10036366 [exp] 303 / 6e-96 AT4G00370 812 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10014769 [exp] 229 / 2e-65 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10026551 [exp] 196 / 7e-57 AT5G44370 713 / 0.0 phosphate transporter 4;6 (.1) Lus10013836 [exp] 195 / 2e-56 AT5G44370 714 / 0.0 phosphate transporter 4;6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.001G248200.2 pacid=42790968 polypeptide=Potri.001G248200.2.p locus=Potri.001G248200 ID=Potri.001G248200.2.v4.1 annot-version=v4.1 ATGAACTCTTCGCTCCCTCTCAGACAGCCAATTCGCACCCACTCTCTAATTCCACTTCAAAATCATAAATCCGCGCGTTTCAAGCTCCAACCCTCTCGTT TCGTTAACTCCTCAATCCAAAACTGCTCTAGAACCGTTTCATTTTCACCGAGTTCGATCCCAACTCAACCACGATTCAATGGCTCAGTCGAATTTCGTAC AGTCCCGTCCTTGCGAGTTAGGGTTTCGTCGAACGACGCACAGTTCGGTTCGTTAAACGAAGATTGCGAGCCGAAGGCGCCGAGTTTTAGAGAGTTTATA ACATCAGAGAGGATTAAAGTGGTGTCGATGCTTGCTCTGGCACTGGCTCTATGTAATGCTGATCGTGTGGTCATGTCGGTGGCGATTGTACCTTTGTCTC TTGCTCATGGTTGGAGCCGATCCTTCTCTGGTGTTGTTCAGTCATCTTTCCTGTGGGGATACCTAATTTCACCTATAGCGGGAGGGACGCTGGTGGATTA TTATGGTGGTAAGGTGGTGATGGGATGGGGTGTTGCTTTGTGGTCATTAGCTACATTTCTTACTCCATGGGCTGCAGATACTTCGTTATGGGCTCTACTT GCTACACGAGCGATGCTTGGCATTGCTGAAGGTGTGGCTCTTCCTTGTATGAACAACATGATAGCAAGATGGTTCCCACAGACAGAACGAGCCAGGGCTG TTGGGATTGCAATGGCTGGATTTCAATTTGGAAATGCAATAGGACTCATGCTATCTCCAATCCTAATGTCAAAAGGTGGAATATTTGGGCCGTTTGTGAT TTTTGGACTATCTGGATTCCTGTGGGTTTTGGTTTGGTTATCTGCAATATCAAGTACTCCTGACCGCAGTTCCCAGATATCAAAATATGAATTGGAGTAC ATATTAAACAAGGGGTGGAAATCATTTCCCATGGAGAATAAGCCTAAGACAAACAGAATAATCCCTCCTTTCAGGCGCTTGCTTTCGAAGATGCCAACTT GGTCCCTAATTATTGCCAATGCAATGCATAGCTGGGGATTTTTTGTTATTCTCTCCTGGATGCCCATTTATTTTAACACTATATATCATGTTGACCTCAA ACAAGCAGCATGGTTTAGTGCCGTTCCATGGAGTGTGATGGGATTTATGGGATACTTTGGTGGTACGTGGTCAGACATGTTGATACGCAGTGGTATCAGT GTCACTTTGACTCGAAAAATCATGCAGTCAATTGGCTTTTTTGGTCCTGGGATTGCTCTTATTGGTTTGACAACCGCTAGAAATCCATTTCTTGCATCTG CTTGGCTAACTATAGCTGTTGGACTAAAGTCTTTTAGTCATTCAGGTTTTCTCGTGAATCTTCAGGAGATCGCTCCACGTTATTCTGGTGTTTTACATGG AATATCAAATACTGCTGGAACATTAGCAGCCATTGTGGGAACAGTTGGAGCTGGTTTCTTTGTTGAACTAGTGGGTTCTTTCCGTGGATTTCTGTTGCTC ACATCACTCTTATATTTTCTCGCTGCTCTTTTCTACAACATCTTCTCCACTGGAGAGAGAGTAAATTTCGATGAAACTGGTCCCTGA
AA sequence Show only first row Show all	>Potri.001G248200.2 pacid=42790968 polypeptide=Potri.001G248200.2.p locus=Potri.001G248200 ID=Potri.001G248200.2.v4.1 annot-version=v4.1 MNSSLPLRQPIRTHSLIPLQNHKSARFKLQPSRFVNSSIQNCSRTVSFSPSSIPTQPRFNGSVEFRTVPSLRVRVSSNDAQFGSLNEDCEPKAPSFREFI TSERIKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGVVQSSFLWGYLISPIAGGTLVDYYGGKVVMGWGVALWSLATFLTPWAADTSLWALL ATRAMLGIAEGVALPCMNNMIARWFPQTERARAVGIAMAGFQFGNAIGLMLSPILMSKGGIFGPFVIFGLSGFLWVLVWLSAISSTPDRSSQISKYELEY ILNKGWKSFPMENKPKTNRIIPPFRRLLSKMPTWSLIIANAMHSWGFFVILSWMPIYFNTIYHVDLKQAAWFSAVPWSVMGFMGYFGGTWSDMLIRSGIS VTLTRKIMQSIGFFGPGIALIGLTTARNPFLASAWLTIAVGLKSFSHSGFLVNLQEIAPRYSGVLHGISNTAGTLAAIVGTVGAGFFVELVGSFRGFLLL TSLLYFLAALFYNIFSTGERVNFDETGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Potri.001G248200 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.007G109400 [exp]	19.74	0.6338
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.004G047300 [exp]	26.07	0.6034
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.017G091000 [exp]	30.98	0.6118
AT5G40500			unknown protein		Potri.001G344700 [exp]	36.98	0.5973
					Potri.001G014050 [exp]	38.53	0.6036
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.005G106200 [exp]	39.68	0.5593
AT1G17550		HAB2	homology to ABI2 (.1)		Potri.001G198501 [exp]	42.04	0.6091
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.003G198000 [exp]	62.25	0.5824
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.011G124700 [exp]	69.16	0.5595
AT1G54460			TPX2 (targeting protein for Xk...		Potri.005G055900 [exp]	80.14	0.5736

Compare expression of checked genes

Potri.001G248200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.