Plant FIBer expression Database

Potri.001G248400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58930 286 / 6e-90 Protein of unknown function (DUF740) (.1)
AT3G46990 261 / 6e-80 Protein of unknown function (DUF740) (.1)
AT2G38070 158 / 2e-41 Protein of unknown function (DUF740) (.1)
AT3G09070 145 / 7e-37 Protein of unknown function (DUF740) (.1)
AT5G01170 132 / 2e-32 Protein of unknown function (DUF740) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G042200
[exp]
804 / 0 AT5G58930 268 / 5e-83 Protein of unknown function (DUF740) (.1)
Potri.016G111400
[exp]
306 / 1e-95 AT3G09070 291 / 2e-88 Protein of unknown function (DUF740) (.1)
Potri.006G096600
[exp]
304 / 1e-94 AT3G09070 283 / 3e-85 Protein of unknown function (DUF740) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018206
[exp]
360 / 3e-117 AT5G58930 234 / 6e-70 Protein of unknown function (DUF740) (.1)
Lus10040700
[exp]
266 / 6e-82 AT5G58930 221 / 2e-65 Protein of unknown function (DUF740) (.1)
Lus10035513
[exp]
175 / 6e-47 AT3G09070 465 / 8e-155 Protein of unknown function (DUF740) (.1)
Lus10027785
[exp]
157 / 1e-40 AT3G09070 385 / 7e-125 Protein of unknown function (DUF740) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05340 DUF740 Protein of unknown function (DUF740)
Representative CDS sequence
>Potri.001G248400.1 pacid=42789129 polypeptide=Potri.001G248400.1.p locus=Potri.001G248400 ID=Potri.001G248400.1.v4.1 annot-version=v4.1
ATGACTCAGCCACTGCAGCCTCAGCTCCAAAAGCACCGCCACTCATCCTGCAACCGCCACCCTTCAAAACCCATCACCGGATTCTGCGCTTCCTGTCTCC
GAGAACGCCTCGCTGGCATCGACCCTGACACCCACCAAGAAACCCCCGTGACTCATCTCGCCGCCGAGCTTCGTCGCAGCAAATCATACTCCAGCACGAC
AAAAAACAACCCCAACAATCACAATGCCTCCTCCACCTCTACCTCCTCAACCACTGCAACCACCTCTGAGCCCCGCCGCAAGTCATGCGACGTTGGACCG
ATTCGCAACACTCTATCTGAGCTCTTCCACGTCGATGATAAAAGAATAAATTCCTCGGCTCAAAAGCCAAAGTGTCTGGATTCAGGGCTTGAATTAAAAG
AAGAGGAAGGTTTCGGAGAGATTAGGGTTCTTGCGCTGGATGCGAATGATAGTGAAAGGAATGTGGAGGATTTTGAAGAGGATGGAGAGCTAAAGACAAT
GAAGGAGTTTATAGATCTTGAATGGGAGAGAAAGAAAAATGGAGGGAGAGATCTGAAGTACATTGCAGGGAGTTTTTGGGAGGTAGCTTCAGTGTTTAGT
AAGAAATTAGGGAAATGGCAGCGAAAACAAAAGAAGAAGGAGAAGAAAGATAGGGAAAATCTTGGTGGCTTGGTGAGAAATGAGATGTCGAGTGTTAGGA
AATTGAGAGAGACACAATCCGAGATTGGAGAGTATGGACTTGGAAGGAGATCTTGTGATACCGACCCTAGATTATCAGTGGATGCGGCACGGTTGTCTGT
TGATGATTCGCGCTATTCGTTTGATGAGCCCAGGGCTTCTTGGGATGGGTATTTGATTGGTAAAACCTATCCGAGGCTAACTCCATTGGTTTCGGTTTTG
GAGGATGTCAAGTTGCCTAGTGGTGTGGTTGAGAATGTAAAAGAGAACATGGATTTGAAGAATGAAGGCGAGAGCAGTCCTGGAGGAACGATGCAAACTA
GGAATTATTATTCAGATAGGAGGAGGAAGAGTTTTGATCGTTCGAGCTCTAATCGGAGAGTGGGGCTAGGGGATGAAGAGTTTAAATCGATGTTGAATGC
CAAGGTATCTCCTGAAACAGTTGGGTTATTCCACGGGGCAAAGTTGTTGGTCACAGAGAAAGAATTGAGGGATTCAAATTGGTATTCGCTTAAAGATTAT
GGCGGGCAGAATGTGGATGCTGTTTCCAAAGATGCTACTTCAATTACTGGTGGTGGGGTTAGTAAAAAAGGTTTCAAGAAGCCGCAGAGGTGGTATGGTG
TGTGGAATATTTGGGGTTTGATGCAGAGGAGTAGTCAGAGCAAATGTGGAGATGAGGAGAGTAGTTTTAGTGGAAATGTGGTCGAGGGGCCAATGCCGGA
GTCTTGGCAGAATTTGAGTGGCGTGGCTGATGGAGAAGCAAACGGGATTGTGACCCCGAAGCTTATACGGAGCTATACCGTGAGTGCAAGGGATTCCTGC
CAGATGGCCTGCAGTTCAAGTGGTGCTGAGAGCAAAGAGAATGACATGAAGAGAAGGGAAGATCATTTGCTGAAGCGGAACCGGAGTGCCAGGTATTCTC
CAAACAACCTTGATAATGGCCTGCTACGGTTCTACCTGGCACCATTGAGGAGTTATGGAAGAAGCAAATCTGGAAAGAGTGGACTAAAGAACTCAAACTC
CATGTCAAGGAATGTTTTGTAA
AA sequence
>Potri.001G248400.1 pacid=42789129 polypeptide=Potri.001G248400.1.p locus=Potri.001G248400 ID=Potri.001G248400.1.v4.1 annot-version=v4.1
MTQPLQPQLQKHRHSSCNRHPSKPITGFCASCLRERLAGIDPDTHQETPVTHLAAELRRSKSYSSTTKNNPNNHNASSTSTSSTTATTSEPRRKSCDVGP
IRNTLSELFHVDDKRINSSAQKPKCLDSGLELKEEEGFGEIRVLALDANDSERNVEDFEEDGELKTMKEFIDLEWERKKNGGRDLKYIAGSFWEVASVFS
KKLGKWQRKQKKKEKKDRENLGGLVRNEMSSVRKLRETQSEIGEYGLGRRSCDTDPRLSVDAARLSVDDSRYSFDEPRASWDGYLIGKTYPRLTPLVSVL
EDVKLPSGVVENVKENMDLKNEGESSPGGTMQTRNYYSDRRRKSFDRSSSNRRVGLGDEEFKSMLNAKVSPETVGLFHGAKLLVTEKELRDSNWYSLKDY
GGQNVDAVSKDATSITGGGVSKKGFKKPQRWYGVWNIWGLMQRSSQSKCGDEESSFSGNVVEGPMPESWQNLSGVADGEANGIVTPKLIRSYTVSARDSC
QMACSSSGAESKENDMKRREDHLLKRNRSARYSPNNLDNGLLRFYLAPLRSYGRSKSGKSGLKNSNSMSRNVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G58930 Protein of unknown function (D... Potri.001G248400
[exp]
0 1
Potri.001G015450
[exp]
2.23 0.6918
AT3G56720 unknown protein Potri.016G036000
[exp]
4.00 0.6992
AT5G60960 PNM1 PPR protein localized to the n... Potri.017G133400
[exp]
7.07 0.7146
AT3G53440 Homeodomain-like superfamily p... Potri.006G280800
[exp]
11.87 0.7294
AT5G18475 Pentatricopeptide repeat (PPR)... Potri.002G103600
[exp]
13.41 0.6370
AT3G06660 PAPA-1-like family protein / z... Potri.008G106200
[exp]
15.49 0.6411
AT3G51780 ATBAG4 BCL-2-associated athanogene 4 ... Potri.016G121200
[exp]
16.49 0.6685
Potri.006G196300
[exp]
28.14 0.5901
AT4G01310 Ribosomal L5P family protein (... Potri.014G089100
[exp]
29.54 0.6878 RPL5.2
AT1G19520 NFD5 NUCLEAR FUSION DEFECTIVE 5, pe... Potri.005G228200
[exp]
43.24 0.6294

Potri.001G248400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.