Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54140 835 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 818 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 708 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 657 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 600 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G68570 474 / 8e-162 Major facilitator superfamily protein (.1) AT4G21680 467 / 4e-159 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT1G32450 467 / 8e-159 NRT1.5 nitrate transporter 1.5 (.1) AT2G40460 464 / 3e-158 Major facilitator superfamily protein (.1) AT5G46040 456 / 9e-155 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G042400 [exp] 1078 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 871 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 844 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 824 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 718 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 658 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G029200 [exp] 528 / 0 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.005G233500 [exp] 519 / 4e-179 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.008G170100 [exp] 513 / 3e-177 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018207 [exp] 922 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040698 [exp] 829 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10035516 [exp] 828 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 824 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10030947 [exp] 718 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 708 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 685 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 682 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 648 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024300 [exp] 529 / 0 AT3G54140 532 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.001G248600.4 pacid=42789727 polypeptide=Potri.001G248600.4.p locus=Potri.001G248600 ID=Potri.001G248600.4.v4.1 annot-version=v4.1 ATGGCAGAGGAGGATGTTTATACAAAAGATGGAACAGTGGATTATCGTGGGAATCCAGCTAACAAAAAGGAGACGGGAACCTGGAGAGCCTGCCCTTATA TTATAGGAAATGAATTTTGTGAACGATTGGCTTACTATGGGATGAGCTCCAATCTGATTCTTTATTTCAAGCACAGACTGAATCAACAAAGCGCTACAGC TACTAGAAATAACTTGAATTGGGGTGGAACGTGCTATCTCACTCCATTGATTGGAGCATTCTTTGCTGATGCTTATCTTGGTAGATATTGGACGATTGCT TGTTTCTCCATCATATATGTTATGGGGATGACACTTTTGACAATCTCAGCTACTGTCCCTGGCCTAAGGCCAAAATGTTATGCAGAAGATGATTGTAATC CAACAGATGCTCAAAGTGCATTAGCTTTTGTATCACTTTACCTAATAGCACTAGGCACTGGTGGTATTAAGCCTTGTGTCTCATCCTATGGAGCAGATCA GTTTGATGACGCTGATGAGGTTGAGAAAAAACACAAGAGTTCTTTCTTCAACTGGTTCTACCTCTCAATTAATGTTGGTGCTCTTATTGCCGGTTCTGTG CTGGTTTGGGTACAAGATAATGTGAGTTGGGGTTGGGGTTTTGGCATTCCAGCAATAGCCATGGCAATTGCGGTTGCGAGCTTCTTTTCAGGTACTCGGT TGTTCAGGTATCAAAAGCCTGGAGGCAGCCCTCTTACTCGCATCTGTCAGGTGCTGTTGGCATCCTTCAGAAAAAAGAAAGTTGAAGTTCCAGCTGACAA GGCTTTGTTGTATGAGACTGCGGATGCCGAATCCAACATCAAAGGAAGCCGCAAGCTTGACCATACTGAAGAATTTAGTTTCCTTGACAAGGCAGCAGTG GAAACAGAAAAGGACGACATAAAGGGGCCAGTAGACCCATGGAGACTTTGCACTGTAACCCAAGTTGAGGAGCTAAAGTCTATCATTCGGTTGCTTCCCA TATGGGCCACAGGTATCATCTTTACTGCAGTGTACAGCCAGATGGGGAACCTATTTGTGCTGCAAGGTGAACAGATGGATAAATATGTTGGAAACTCCAA TTTCCAGATACCATCTGCATCTCTATCAATCTTTGACACTCTTAGTGTCATTTTTTGGGTCCCGGTCTATGACCGAATTATTGTCCCAGTTGCAAGAAAA TACACCGGACACAAAAATGGCTTAACTCAACTGCAGCGGATGGGCATTGGTCTCTTCATATCAATATTTTCCATGGTATCTGCAGCAATCTTGGAACTTA AAAGACTTGAAATGGTGAGAAGGCACAACTCCTACGAACTTAAAACCGTGCCCTTGTCTATATTTTGGCAAGCTCCACAGTATTTCCTGATAGGGTGTGC AGAAGTTTTCACATTCATCGGACAGTTGGAATTCTTCTACGAGCAAGCACCTGATGCAATGAGGAGCATGTGTTCTGCCCTATCACTCACCACCGTCGCA CTTGGTAGTTACTTAAGCTCTCTTCTTGTAACCATTGTTACAAGCATCAGCACTAAGAATGGAAAGCCTGGATGGATACCGGAGAACTTAAATTATGGTC ACATTGATTACTTCTTCTGGCTACTGGGAGTACTCAGTGTGCTGAATCTATGTGTCTTTCTCTTGATCTCAAATTGGTACACGTATAAAAAGCCAGTGGG AACTCTTCGTTGA
AA sequence Show only first row Show all	>Potri.001G248600.4 pacid=42789727 polypeptide=Potri.001G248600.4.p locus=Potri.001G248600 ID=Potri.001G248600.4.v4.1 annot-version=v4.1 MAEEDVYTKDGTVDYRGNPANKKETGTWRACPYIIGNEFCERLAYYGMSSNLILYFKHRLNQQSATATRNNLNWGGTCYLTPLIGAFFADAYLGRYWTIA CFSIIYVMGMTLLTISATVPGLRPKCYAEDDCNPTDAQSALAFVSLYLIALGTGGIKPCVSSYGADQFDDADEVEKKHKSSFFNWFYLSINVGALIAGSV LVWVQDNVSWGWGFGIPAIAMAIAVASFFSGTRLFRYQKPGGSPLTRICQVLLASFRKKKVEVPADKALLYETADAESNIKGSRKLDHTEEFSFLDKAAV ETEKDDIKGPVDPWRLCTVTQVEELKSIIRLLPIWATGIIFTAVYSQMGNLFVLQGEQMDKYVGNSNFQIPSASLSIFDTLSVIFWVPVYDRIIVPVARK YTGHKNGLTQLQRMGIGLFISIFSMVSAAILELKRLEMVRRHNSYELKTVPLSIFWQAPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSMCSALSLTTVA LGSYLSSLLVTIVTSISTKNGKPGWIPENLNYGHIDYFFWLLGVLSVLNLCVFLLISNWYTYKKPVGTLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.001G248600 [exp]	0	1
AT4G12070			unknown protein		Potri.018G050100 [exp]	1.73	0.8214
					Potri.015G084300 [exp]	2.23	0.8425
					Potri.003G184250 [exp]	7.74	0.8054
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Potri.003G091200 [exp]	8.83	0.8425
					Potri.004G069101 [exp]	10.95	0.7932
AT5G40610			NAD-dependent glycerol-3-phosp...		Potri.017G070900 [exp]	19.59	0.7525
					Potri.016G015300 [exp]	23.74	0.8152
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Potri.015G134800 [exp]	37.22	0.7987
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038000 [exp]	57.12	0.7748
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.011G133800 [exp]	60.00	0.7654

Compare expression of checked genes

Potri.001G248600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.