Plant FIBer expression Database

Potri.001G248704 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G248704.1 pacid=42792717 polypeptide=Potri.001G248704.1.p locus=Potri.001G248704 ID=Potri.001G248704.1.v4.1 annot-version=v4.1
ATGTGTCGCTCTCTGATTCTATGTTTTTGGACTATGTTAGGTAGTCTACTTTGGGTCAGTAACCCCTTTCTCTGTCGAAACAGTTTCTCCAACATGCAAT
TGATCTTTCTGGCCACTCACCACCTTTCTTCACGATTTGTTCAAGGAATTCTTTCCCCTCGATCCTTAGCTTTCTGTTTCTTTTTGTTCTCTTCTCAAGT
TATTAGCTCCTTCGTGTTCAAATTGTTGTTGTTACGTACTGGACAAATGCTGATGCGATTTCTTCGCTGCAGGATCATTGATCGTCCAGCATTTTGGCAA
CGACGTGCAACCACACACCGTTTCTTAACAAATATTTTTGCTGCGATATGA
AA sequence
>Potri.001G248704.1 pacid=42792717 polypeptide=Potri.001G248704.1.p locus=Potri.001G248704 ID=Potri.001G248704.1.v4.1 annot-version=v4.1
MCRSLILCFWTMLGSLLWVSNPFLCRNSFSNMQLIFLATHHLSSRFVQGILSPRSLAFCFFLFSSQVISSFVFKLLLLRTGQMLMRFLRCRIIDRPAFWQ
RRATTHRFLTNIFAAI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G248704
[exp]
0 1
Potri.011G164150
[exp]
3.16 0.7127
AT3G21280 UBP7 ubiquitin-specific protease 7 ... Potri.001G197400
[exp]
3.87 0.6930 UBP6.2
AT3G13080 EST2, ATMRP3, A... MULTIDRUG RESISTANCE PROTEIN 3... Potri.018G149700
[exp]
10.24 0.7249
Potri.009G094450
[exp]
10.95 0.5988
AT5G13420 Aldolase-type TIM barrel famil... Potri.001G068200
[exp]
12.64 0.7160
Potri.012G011490
[exp]
14.07 0.7075
AT5G51600 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA ... Potri.006G269800
[exp]
16.06 0.7504
AT3G53310 B3 REM20 AP2/B3-like transcriptional fa... Potri.004G011000
[exp]
18.49 0.6766
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.002G076001
[exp]
24.37 0.7464
AT5G14420 RGLG2 RING domain ligase2 (.1.2.3.4) Potri.012G090100
[exp]
29.39 0.6488

Potri.001G248704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.