Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17910 136 / 5e-32 unknown protein AT1G07330 123 / 3e-28 unknown protein AT2G29620 121 / 9e-28 unknown protein AT5G58880 94 / 7e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G043000 [exp] 1778 / 0 AT2G29620 169 / 6e-43 unknown protein Potri.013G068800 [exp] 123 / 8e-28 AT5G17910 437 / 3e-129 unknown protein Potri.019G044500 [exp] 122 / 1e-27 AT5G17910 296 / 1e-82 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001202 [exp] 228 / 2e-60 AT2G29620 144 / 6e-35 unknown protein Lus10005869 [exp] 162 / 8e-40 AT5G58880 144 / 6e-35 unknown protein Lus10020367 [exp] 95 / 5e-20 AT5G17910 250 / 2e-73 unknown protein Lus10009543 [exp] 96 / 1e-19 AT2G29620 249 / 1e-71 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G249000.1 pacid=42791844 polypeptide=Potri.001G249000.1.p locus=Potri.001G249000 ID=Potri.001G249000.1.v4.1 annot-version=v4.1 ATGAAAATGGGCATTGATGCAAAGGAATTTCAAGCTTTCATGTGGAGAGTTGTTAAATTTTCCATAAATACTTGTACTGCATTGGCACAAAAATATCCCT TTGCTTCAGGTGTTTTGTTATCCTTGCTGATTTTATACCTGTTTCTTCCTTCAGTATTCTTTTTCTTGATTTACTCTCTACCATTTCTTGGTTGCACTGC TGTTTTTATCCATTATTATTTGAATACACAACGTCCCAAAATCCAACACGGGGATGAGAGGAAGGAACATGGGATCTCTTCTATTGAATCTCGGAGACTG TTGCAGAGAAATGTCAACAAGAACAATATTGACGAATCGGATGCACATGCTGTTAAAGAGGAAAAGGATATGGTTTCCCCCATGATTTCAAATGATGAAT TGATTGGTAGAACTGCCTTGGCCGAAGAAAAACCAAAAATAATCATGGAGGAGAAAGAAAGCCGTGCTTTGAATAGCGGAGAAAGTTCCTCTCACAATGT GTCCATCGGTGAGAATATTTCAGAACTCGGCCAGGCGCCAAATCCTGATGCTGTCTCATGTGATGGCTTTAATGAGCAGCCTACAAAACTTCAAGTTGGT GGTGAAGTGGAGTTGGAGAGCTCAAGCTCCGAAGCAGATGATGATGATGAAGAAGAAGAATCGGAAAAGGGTGGGGAAAACGCTGTACAATGGACCGAGT ATGATCAAAAGAATGTCATGGATCTTGGGAATTCCGAGATAGAAAGAAATAGGAGGCTGGAGATGCTAATTGCAAGACGTAAAGCAAGAAAGTCGTTCAA AATGAATAGTATTGCCGGTTCAGGTCCAAGGCATCCTGTTATGGTTGCCAGAAGCAACACTTTCCACGTTTCTAAGAGTTCAGATGACCAAATACCCGGT TCAGCCCCTTCCATTCTGTTACCAACCAAAAATCCATTTGACCTTCCATACGACCCACATGAAGAAAAGCCTAATCTAATGGCTGACAGTTTCCACGAAG AATTTATGGCAGATCACCAGAAAGAATTTCCCTTCTGCAGGCATGAGAGCTTCTCTTTGGGAAATTCTTTCCAGGATAACAGGCAAGGTCAACACGAGGG CCGAGGATCTTCTAGACCTAAAATGCAATCAGGCAATAAGGGAAATCATGATCGGCTGGTTGATCATTTATTATTTCAGGGTGGTGAAACCTTGCGCCGT AACTTAAGTGTTACTGATCTTGTGACAGAAGAACCCCAATCTTCCAACCAGGTAGCTAACAAACAGGAACGGGATAGAGAAGTTGGAACCACCAGGATCA AACTCATAGGTGAGAAGATGGAGCAATCTCATTACAAGGATCCAAGTTTAGGTAATGGAAGTGATATTCAAATGAACAAAGATGCGAATGCGATCAAGCA CAAGAAAATTTTGTCAAACCCATCTTCTTCTGCAGAAGACATTCTTAATGCTAAGACAGCTGAAAATTCAGAAAGTATACAACCGACAACGTTCAAATTT CCCGAGGTGTTTTATGATCGGGCACCGAACTCTCTCCCTTGTCCAGTTCCTAAGGCTAGAGCTGTAGCTGAACCTTCGTATGATTCCAGCCCTTCTCCAA TTGACAACACGAGAATGGAGGAACATTTCTTTTACAAGCTCAAGCCTGGGCATACCCCTAACCACTCCATAGCTTCTGACATGCAAGTGGAGGTCTCAGA AATTGGTTCACCCCCTCTGATTGAAGATGGAACTGCTTCATCCAATGATGACGAGTCCTTGATTTATGACGGGGATAGCGAGAACGAATTCACTTCTGGG AGTGAAGAACTGTGGGGTTCTTCGCCACTTGCACCAAAAGTTCAAGAACATGGAAAGGCACGTGGACAAATATACGAGGAAGGGGAAGAGGGTATGACAG AAGTAGAGTTCTCAAGGGTCTGGGACGAACCCGAGAATCCAATTTCATCATCAATGTGGCCGTTATCATCTTCAAGAGCTGAAATATCTCAAGAGGATCA AGCCCATTCAATGAAAATTGATCCTAAACTATCTAATCATGTCAAGGACGAAGTTGATGAAGTAAGGGAGCAGAGGCCTTCTAATGCTTCTGATGTGGAC GAAGTTGAAGAAGTAAGGGAGGAGAGGCCTTCTAATTCTTCTGATGTAGTTCCACCTGAACATTCCCTGGAAGGAACGCGATTGATGGAGGGTTCAATGG CTCACTCGCCTTCTGAAGTGTACTTTCCAGAACCGCAGGAATCACCGAGTGGTTCTGGGAATTCTGCAGAAGAGAAGAAAACGAATTGCGATGCAAATGA AACAGTCACATATGATGATAGGGAATATTTGAAGTCAAATGAAAACAGACATGTTGGAGCTGAAAACTCCATTATGCAAGAAGTTTTAGGCAATCTATCA GAACCAGCTGAGGGAAATAATTCAACATCTAATAGCAATATCAAGATCGAATCATTGTTTAACTCTGAGAAGTATGTAGAGGGCATAGGTGACGAAACTT ACGATGTAAATGATTCAACGTTCCTCATAAGTGATCGCTTAGAAGACTCGAAATCAAATGAAGAAAGAGATAGTGGAGCTGAAAGAGTCATGCAAGCAGT CATAGGTGATTTGTCACAACCAGCTGTGGAAAGTAATTCAGAATCTAGCAATCATATAGAGAGTAAATCATTGAATTCTCCTGAGAAGTCTAGAGAGGAG GCAAACATCAACAATGTGAATGACCCACCAGTTCAAATTAAGGATCGTGTTGAAGACTTCAAAGATGTCGACCGAGATTCTGAAAGGCTGACAGAAGATT CAGACATTCAGAGCATTTTAATGCCAGTCGAAGCTGAAGACAACCCGACATCAACTCAAGGCAGTAAAGAAGATCAAAGTACAATAGAAGTTGGAGTTTC TGTGGTAAACCAACCTTTTACTGATCCAACTACATCAGCCACCCTGCCAGAATTTGTGGCTGAACAAGTTTCTAACAATTCAAGTTTATCCTCGTCTCCA AAGTCTGTTTTAGCATACAGGATCCCAGCAGATATAGGTTCTTCATCAGATTTCAGTCAACTGGTGGCCACTGATATGGAGGAAAATTTACTTATGACCG CAACTCAGGATACCAGTCTTGCGGTAAATGATTCAATAGATCACCCATCTATTGATAGAAAATCTGAAAAATCTGAGGAACCATATGACACTCAAGGGAA GTGTACTGAAGAAGCCATTGACATGGAGAACATGAATGGATCAGTGCTTGATGATGAGCAAATCAAGGAGAATTTAAAATGTAGGAAAAACATAGAATAC GAATCAGAAACATTGATCAGTAACGAGGCTTCTGTAGAACTGTCAGAACCACTTGAAGAACCCCAAACTGCTGATCATCTTGAAGGTGCATCTGCAAGAC TTGTGGACAATGAAGCAAGCATTAACCTATCAAAACCAGATGAGGAGCATGTCAGTTCAAAAGTTCCAGGAGTTTTAGTAGAAAAGGAGGAGTCAACAAA TCCTCCAAGAGATGTTGCAGGAGAAGTTAATCACATCAGTGATGTTAGTGATCCATCAATAAATAAGAACGACGATTTGGAGAAGTTAAAGTCTTTTGAA GGCAGTGAAGGTGAACCTGATCAATTTTCAACTGGACATGAGATATTTGTGGAACCACTAAAACCAGCCAATATTACTTCCCTAGAAGGCCATGAGTACA GTCCTGGAGTATTAACTGAAAATGAAACAATTGTCGCATCATCTCAAGCAATCGAGGAAGTTGATAATTCAAGAACCAGCAAGGAAACTGATGAGTTTGG AACACAAATAGCAGACGAGGAAATTGAAGACTTGTTAAAGCCAGGAGAGGCTGTTGTCTCCTCAGAAACCACTAAGAATGTCCAAGGTGACCCTAAAGAT TTAATTGATCAAAAGGCTGTCCTTAACCCATCAACACCAGCTGTTGATGACGACAACATCTTAGTGACTCCTGAAGCAAAGGACTCTGCAGCTGACACTA TTCACAATGTGAATGAATCAGAGATGAGTGAATTTATCAGCAACGAGAAGTTCAAGCATGTACAAGACAGTGAAGACGAATCTCAAAGATTAGATAGACA AGAGGATATCATGGAACCACTTAAAGCAGTGGAGGTTACAAACTCAGAATCCATCAGAGATATTGAAGGTGAATCAAAAAAATTGGCCGACGATGAAGTT AATGTCACCATCCCATCGCAGCCAGAAGGGGAAATTAATAGTTCAGATGACAGAGAAAAAACCGAGGATCCTGGAAAGTCAATTGTTCAGGAGAATGGTA TGGACATATCCGAGGTAAGCAGGGGTAACGATATTGCAAGGGCCGTTGAAGATAACAAAGATAAATCTGAAGACAAAACTGAGATCAATGGATAG
AA sequence Show only first row Show all	>Potri.001G249000.1 pacid=42791844 polypeptide=Potri.001G249000.1.p locus=Potri.001G249000 ID=Potri.001G249000.1.v4.1 annot-version=v4.1 MKMGIDAKEFQAFMWRVVKFSINTCTALAQKYPFASGVLLSLLILYLFLPSVFFFLIYSLPFLGCTAVFIHYYLNTQRPKIQHGDERKEHGISSIESRRL LQRNVNKNNIDESDAHAVKEEKDMVSPMISNDELIGRTALAEEKPKIIMEEKESRALNSGESSSHNVSIGENISELGQAPNPDAVSCDGFNEQPTKLQVG GEVELESSSSEADDDDEEEESEKGGENAVQWTEYDQKNVMDLGNSEIERNRRLEMLIARRKARKSFKMNSIAGSGPRHPVMVARSNTFHVSKSSDDQIPG SAPSILLPTKNPFDLPYDPHEEKPNLMADSFHEEFMADHQKEFPFCRHESFSLGNSFQDNRQGQHEGRGSSRPKMQSGNKGNHDRLVDHLLFQGGETLRR NLSVTDLVTEEPQSSNQVANKQERDREVGTTRIKLIGEKMEQSHYKDPSLGNGSDIQMNKDANAIKHKKILSNPSSSAEDILNAKTAENSESIQPTTFKF PEVFYDRAPNSLPCPVPKARAVAEPSYDSSPSPIDNTRMEEHFFYKLKPGHTPNHSIASDMQVEVSEIGSPPLIEDGTASSNDDESLIYDGDSENEFTSG SEELWGSSPLAPKVQEHGKARGQIYEEGEEGMTEVEFSRVWDEPENPISSSMWPLSSSRAEISQEDQAHSMKIDPKLSNHVKDEVDEVREQRPSNASDVD EVEEVREERPSNSSDVVPPEHSLEGTRLMEGSMAHSPSEVYFPEPQESPSGSGNSAEEKKTNCDANETVTYDDREYLKSNENRHVGAENSIMQEVLGNLS EPAEGNNSTSNSNIKIESLFNSEKYVEGIGDETYDVNDSTFLISDRLEDSKSNEERDSGAERVMQAVIGDLSQPAVESNSESSNHIESKSLNSPEKSREE ANINNVNDPPVQIKDRVEDFKDVDRDSERLTEDSDIQSILMPVEAEDNPTSTQGSKEDQSTIEVGVSVVNQPFTDPTTSATLPEFVAEQVSNNSSLSSSP KSVLAYRIPADIGSSSDFSQLVATDMEENLLMTATQDTSLAVNDSIDHPSIDRKSEKSEEPYDTQGKCTEEAIDMENMNGSVLDDEQIKENLKCRKNIEY ESETLISNEASVELSEPLEEPQTADHLEGASARLVDNEASINLSKPDEEHVSSKVPGVLVEKEESTNPPRDVAGEVNHISDVSDPSINKNDDLEKLKSFE GSEGEPDQFSTGHEIFVEPLKPANITSLEGHEYSPGVLTENETIVASSQAIEEVDNSRTSKETDEFGTQIADEEIEDLLKPGEAVVSSETTKNVQGDPKD LIDQKAVLNPSTPAVDDDNILVTPEAKDSAADTIHNVNESEMSEFISNEKFKHVQDSEDESQRLDRQEDIMEPLKAVEVTNSESIRDIEGESKKLADDEV NVTIPSQPEGEINSSDDREKTEDPGKSIVQENGMDISEVSRGNDIARAVEDNKDKSEDKTEING

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17910			unknown protein		Potri.001G249000 [exp]	0	1
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012700 [exp]	1.00	0.9594
					Potri.011G108300 [exp]	4.47	0.9562
AT5G40700			unknown protein		Potri.019G075700 [exp]	4.69	0.8535
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124300 [exp]	9.38	0.8960
AT1G47990		ATGA2OX4	Arabidopsis thaliana gibberell...		Potri.010G149700 [exp]	11.18	0.8481	GA2ox5,Pt-GA2.3
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096100 [exp]	12.32	0.9135
AT5G17860		CAX7	calcium exchanger 7 (.1)		Potri.019G040200 [exp]	12.64	0.8815
AT4G20800			FAD-binding Berberine family p...		Potri.001G459200 [exp]	14.42	0.8875
					Potri.018G088701 [exp]	16.49	0.8711
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023964 [exp]	16.70	0.9053

Compare expression of checked genes

Potri.001G249000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.