Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58870 997 / 0 FTSH9 FTSH protease 9 (.1) AT3G47060 980 / 0 FTSH7 FTSH protease 7 (.1) AT1G50250 337 / 4e-104 FTSH1 FTSH protease 1 (.1) AT1G06430 333 / 2e-103 FTSH8 FTSH protease 8 (.1) AT5G42270 333 / 5e-103 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT2G30950 330 / 8e-102 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT5G15250 323 / 2e-99 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G07510 312 / 4e-94 FTSH10 FTSH protease 10 (.1) AT2G29080 308 / 1e-92 FTSH3 FTSH protease 3 (.1) AT5G53170 294 / 2e-87 FTSH11 FTSH protease 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G043100 [exp] 1219 / 0 AT5G58870 1039 / 0.0 FTSH protease 9 (.1) Potri.002G012000 [exp] 338 / 8e-105 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 337 / 3e-104 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 336 / 5e-104 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 332 / 2e-102 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 322 / 6e-99 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.009G033600 [exp] 317 / 6e-96 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 308 / 2e-92 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.012G000700 [exp] 291 / 1e-86 AT5G53170 1076 / 0.0 FTSH protease 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005868 [exp] 1083 / 0 AT5G58870 1105 / 0.0 FTSH protease 9 (.1) Lus10001203 [exp] 1072 / 0 AT5G58870 1093 / 0.0 FTSH protease 9 (.1) Lus10018210 [exp] 978 / 0 AT5G58870 1049 / 0.0 FTSH protease 9 (.1) Lus10040695 [exp] 973 / 0 AT5G58870 1047 / 0.0 FTSH protease 9 (.1) Lus10012277 [exp] 339 / 7e-108 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 340 / 3e-105 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 337 / 5e-104 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 334 / 2e-103 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 334 / 2e-102 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001573 [exp] 309 / 1e-92 AT1G07510 1194 / 0.0 FTSH protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41 CL0126 [poplar] [flax] PF06480 [poplar] [flax] FtsH_ext FtsH Extracellular CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.001G249100.1 pacid=42791714 polypeptide=Potri.001G249100.1.p locus=Potri.001G249100 ID=Potri.001G249100.1.v4.1 annot-version=v4.1 ATGTCATCGATGCTTGAAATTCTAAGACCAATAACGCACATCTCTCCTACTCTTCCTCCTCCTCTTACTAAATTTCATTCAATTCGACTCCAGTCTTCTA GGGTTCTCCACCACCGTTTTGCCCCAAATATTAATAATAATTGCCTCTCTTTTCCTTCAATTAATCCCAAATCCTTCAGTTTTTTATCCAACACCAAAAT CAGAGACTATAAAATCTTAGCTAAATGTCAAGAAAGCGATTCCACCGAGAAAACAAGCACCGAAACCGAACCACCAAACAATCCTCCGTCAGCGCCGTCT TCGTCGTCTAATTCGGGGTCCAAGCAGAAGAGAGAGAAGCGAGGGAAAAGCGAATGGTGGTTTTCCAAGAAGCAGAATTGGAAATGGCAACCTTTAATTC AAGCGCAAGAAATTGGTGTCTTGCTTTTGCAATTAGGGATTCTTATGTTCGTTATGCGGTTGCTCCGACCCGGAATTGCTTTGCCCGGGTCGGAGCCGAC GCAACCCACTACCTTTGTCAGCGTGCCCTATAGTGAGTTTTTGAGTAAAATTAGCAGTAATCAAGTGCAGAAAGTGGAGGTTGATGGCGTGCATATAATG TTTAAGTTAAAAAATGAGGGAATTAGTAGTCAAAAGAGTGGTGGTGGTGGTAGTAGTAGTGAAGTGGTTAGTAGCAAGTTTCAAGATTCGGAGTCTTTGT TAAGGAGTGTGACGCCTACGACAAAAAGGATTGTGTATACTACGACGAGACCTACTGATATTAAGACTCCTTATGAGAAGATGCTGGAGTATCAGGTGGA GTTTGGTTCGCCTGATAAGAGGTCCGGTGGATTCTTGAATTCGGCATTGATAGCTTTGTTCTATGCAGCTGTGCTTGCGGGGCTTCTGCACCGTTTCCCT GTTTCCTTCTCTCAGCATAAAGCTGGTCAGATTAGGAACCGCAAGTCTGGGGGCTCTGGAGGTTCAAAAGATTCCGAGCAAGGTGAAACAATAACTTTTG CCGATGTAGCTGGTATTGATGAAGCTAAGGAAGAGCTAGAAGAAATTGTGGAATTTCTCAGGAATCCAGACAGGTATACCAGACTTGGTGCTCGTCCTCC TCGAGGTGTTCTTCTGGTGGGCCTTCCTGGGACTGGTAAGACACTTCTAGCAAAGGCTGTTGCTGGAGAAGCTGAAGTTCCCTTTATAAGTTGTTCCGCA AGTGAATTCGTAGAGTTGTATGTTGGCATGGGTGCCTCCCGTGTGAGAGATCTCTTTACCCGGGCAAAGAAGGAGGCACCATCCATAATATTTATTGATG AGATAGATGCTGTGGCAAAAAGTCGTGATGGAAAATTCCGCATTGTTAGCAATGATGAAAGGGAGCAGACTTTGAATCAGTTGCTCACTGAGATGGATGG GTTCGATAGCAATTCTGCTGTGATTGTTCTTGGTGCAACAAATCGCTCTGATGTGTTAGACCCTGCACTCCGCCGACCAGGAAGATTTGATCGCGTGGTT ATGGTGGAAACACCTGATAGAAATGGAAGAGAAGCCATTTTAAAAGTACATGTTTCCAAGAAGGAACTACCTCTAGGAGAGGATGTTGACCTCAGTGATA TTGCCTCTATGACTACTGGTTTTACTGGGGCAGATCTTGCAAATCTGGTAAATGAAGCTGCTTTGTTGGCTGGAAGGAAAAACAAAGTAGTGGTGGAGAA ACTTGATTTCATTCAGGCAGTGGAGCGGGCAATAGCGGGCATTGAGAAGAAGACTGCCAGGTTGCAAGGAAGTGAGAAGGCTGTGGTTGCACGCCATGAA GCCGGTCATGCAGTAGTAGGTACTGCTGTTGCTAATATCCTTACTGGACAGCCACGTGTTGAGAAGTTGAGCATATTACCAAGGTCAGGAGGGGCATTGG GCTTTACTTATATACCAGCAACAAACGAGGATAGATATTTGCTCTTCATTGATGAGTTGCGCGGCCGCTTGGTTACTCTTCTCGGAGGACGGGCAGCAGA AGAAGTTGTGTATTCAGGTCGTGTCTCAACAGGTGCCCTGGATGATATTCGGCGGGCTACTGATATTGCATACAAGGCAGTAGCTGAATATGGTCTTAAT CAGACCATAGGTCCTGTGTCTTTAGCAACACTTTCTGGAGGAGGGATGGATGACTCTGGAGCTGCTCCATGGGGAAGGGATCAGGGGCATCTTGTTGATC TTGTTCAAGGAGAGGTGAGAGCATTGCTGCTATCTGCCCTTGATGTAGCACTTTCTGTTGTGCGTGCTAATCCAACTGTCTTGGAGGGACTTGGTGCCTA TCTGGAAGAGAAAGAGAAAGTAGAAGGCAAAGAGCTGCAAGAGTGGTTGAAGTTGGTAGTTGCTCCAAAAGAGCTTGTGCTCTTTGTCGAGGGCAAGCAA GAATCTCTTCTCCCGCTGCAAGCAGGCTCCTAA
AA sequence Show only first row Show all	>Potri.001G249100.1 pacid=42791714 polypeptide=Potri.001G249100.1.p locus=Potri.001G249100 ID=Potri.001G249100.1.v4.1 annot-version=v4.1 MSSMLEILRPITHISPTLPPPLTKFHSIRLQSSRVLHHRFAPNINNNCLSFPSINPKSFSFLSNTKIRDYKILAKCQESDSTEKTSTETEPPNNPPSAPS SSSNSGSKQKREKRGKSEWWFSKKQNWKWQPLIQAQEIGVLLLQLGILMFVMRLLRPGIALPGSEPTQPTTFVSVPYSEFLSKISSNQVQKVEVDGVHIM FKLKNEGISSQKSGGGGSSSEVVSSKFQDSESLLRSVTPTTKRIVYTTTRPTDIKTPYEKMLEYQVEFGSPDKRSGGFLNSALIALFYAAVLAGLLHRFP VSFSQHKAGQIRNRKSGGSGGSKDSEQGETITFADVAGIDEAKEELEEIVEFLRNPDRYTRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA SEFVELYVGMGASRVRDLFTRAKKEAPSIIFIDEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV MVETPDRNGREAILKVHVSKKELPLGEDVDLSDIASMTTGFTGADLANLVNEAALLAGRKNKVVVEKLDFIQAVERAIAGIEKKTARLQGSEKAVVARHE AGHAVVGTAVANILTGQPRVEKLSILPRSGGALGFTYIPATNEDRYLLFIDELRGRLVTLLGGRAAEEVVYSGRVSTGALDDIRRATDIAYKAVAEYGLN QTIGPVSLATLSGGGMDDSGAAPWGRDQGHLVDLVQGEVRALLLSALDVALSVVRANPTVLEGLGAYLEEKEKVEGKELQEWLKLVVAPKELVLFVEGKQ ESLLPLQAGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.001G249100 [exp]	0	1
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.017G146800 [exp]	1.41	0.9460
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.015G012900 [exp]	2.00	0.9461
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G147600 [exp]	4.89	0.9322
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	7.34	0.9336
AT2G30500			Kinase interacting (KIP1-like)...		Potri.019G131000 [exp]	10.14	0.8968
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.012G005900 [exp]	10.39	0.9180
AT3G17970		ATTOC64-III	translocon at the outer membra...		Potri.012G046900 [exp]	13.96	0.9069	TOC64.1
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.002G078700 [exp]	15.09	0.9335	NADK2.2
AT5G15330		ATSPX4	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.017G086600 [exp]	15.93	0.8910
AT5G47040		LON2	lon protease 2 (.1)		Potri.003G086000 [exp]	16.79	0.8878	LON.2

Compare expression of checked genes

Potri.001G249100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.