Plant FIBer expression Database

Potri.001G249200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G29630 1114 / 0 PY, THIC PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G043200
[exp]
1251 / 0 AT2G29630 1115 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018211
[exp]
1150 / 0 AT2G29630 1144 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Lus10040694
[exp]
1148 / 0 AT2G29630 1141 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF01964 ThiC_Rad_SAM Radical SAM ThiC family
Representative CDS sequence
>Potri.001G249200.11 pacid=42792106 polypeptide=Potri.001G249200.11.p locus=Potri.001G249200 ID=Potri.001G249200.11.v4.1 annot-version=v4.1
ATGGCATCTGTCCAAGCTGCTGCTATTTTGACATCCTCAGCTGTAACCAAGAATGGCATTACCACTGCCTTTTTACCACCTGGATTTTCGAGTGCATCAG
CAGCAGCATGCAAGAAGGATTTCTGCGCTCGCTCTCTGGCGTCGGGAGCCAGAGCTACTTTAACATTCGATCCACCACCAGCAACTAAGCAAAAGAAGAA
CACTGTCGATCCTTCTTCTCCTGATTTTCTTCCTCTTCCCTCTTTTGAACAATGTTTTCCAAAGAGCACTAAAGAATACAGGGAAGTTAAACATGAAGAA
TCTGGTCATGTCCTCAAAGTTCCGTTCCGGCGAGTCCACTTGTCCGGCGATGAACCAAGTTTTGATAACTACGATACCAGTGGGCCTCAAAACATCAGTC
CCCGCGTAGGACTTCCTAAGCTGCGTAAAGAATGGGTTGACAGGAGGGAGAAGTTAGGAACACCAAGGTACACTCAGATGTACTATGCGAAGCAGGGAAT
TATAACTGAGGAGATGCTGTATTGTGCTGCTCGTGAAAAGCTTGACCCGGAGTTTGTGAGGTCAGAGGTTGCTCGTGGGAGGGCTATTATACCTTCCAAC
AAGAAGCATTTAGAGCTGGAGCCGATGATTGTTGGAAGAAATTTTTTGGTTAAAGTTAATGCAAATATTGGAAATTCTGCCGTTGCGAGCTCTATCGAGG
AAGAAGTTTATAAGGTTCAATGGGCAACTATGTGGGGTGCTGATACTGTTATGGATCTTTCCACTGGTCGTCACATTCACGAGACCCGGGAGTGGATCTT
ACGTAACTCTGCTGTGCCAGTAGGTACTGTGCCTATCTATCAAGCACTTGAGAAAGTAAATGGAATTGCTGAAAATCTTAGTTGGGAAGTCTTCAGAGAC
ACCCTGATTGAACAAGCCGAGCAGGGTGTAGATTATTTCACAATTCATGCTGGGGTTCTGCTGCGGTACATCCCTTTAACTGCAAAGCGCATGACAGGAA
TTGTTTCGCGAGGAGGATCAATCCATGCAAAGTGGTGCTTAGCTTATCATAAGGAGAACTTTGCATACGAGCATTGGGATGACATCCTTGATATATGCAA
TCAATATGATGTGGCCCTGTCAATTGGTGATGGACTGAGGCCTGGGTCCATATATGATGCCAATGACACTGCTCAATTTGCAGAGCTTCTAACTCAAGGG
GAACTGACTCGTCGGGCATGGGAAAAGGATGTACAGGTTATGAATGAAGGGCCTGGACATGTTCCAATGCACAAGATTCCTGAGAACATGCAAAAACAGC
TAGAGTGGTGCAATGAAGCTCCTTTCTATACTCTTGGACCTCTAACAACTGACATTGCTCCTGGATATGACCACATCACCTCTGCTATTGGCGCTGCCAA
TATTGGGGCTCTTGGCACTGCACTTCTCTGTTATGTCACACCAAAGGAGCACCTTGGACTGCCAAACAGAGATGATGTGAAGGCTGGAGTTATAGCGTAC
AAGATATCTGCTCATGCTGCTGATTTGGCAAAAGGTCACCCTCATGCGCAAACCTGGGATGATGCTTTAAGCAAGGCAAGATTTGAGTTCCGATGGATGG
ACCAGTTTGCTCTGTCATTGGATCCCATGACGGCCATGTCCTTCCATGATGAAACCCTCCCATCAGAAGGTGCAAAAGTGGCACATTTTTGCTCCATGTG
CGGGCCTAAATTCTGCTCTATGAAGATAACAGAGGATGTTCGAAAGTATGCAGAGGAGCATGGTTATGGTAGTGCGGAAGAAGCTGTGCAACATGGGATG
GATGCCATGAGTGCTGAGTTCCTGGCTGCTAGGAAAACTATAAGTGGAGAGCAACATGGTGAAGTTGGTGGAGAAATTTACCTGCCAGCAAATTACATCA
GTTCCTCGGAGAGATGA
AA sequence
>Potri.001G249200.11 pacid=42792106 polypeptide=Potri.001G249200.11.p locus=Potri.001G249200 ID=Potri.001G249200.11.v4.1 annot-version=v4.1
MASVQAAAILTSSAVTKNGITTAFLPPGFSSASAAACKKDFCARSLASGARATLTFDPPPATKQKKNTVDPSSPDFLPLPSFEQCFPKSTKEYREVKHEE
SGHVLKVPFRRVHLSGDEPSFDNYDTSGPQNISPRVGLPKLRKEWVDRREKLGTPRYTQMYYAKQGIITEEMLYCAAREKLDPEFVRSEVARGRAIIPSN
KKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAENLSWEVFRD
TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQG
ELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAY
KISAHAADLAKGHPHAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEAVQHGM
DAMSAEFLAARKTISGEQHGEVGGEIYLPANYISSSER

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Potri.001G249200
[exp]
0 1
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Potri.009G043200
[exp]
2.44 0.9692
AT1G64860 SIGB, SIG2, SIG... RNApolymerase sigma subunit 2,... Potri.019G043300
[exp]
2.44 0.9785 RPOD1.1
AT3G26380 Melibiase family protein (.1) Potri.010G048300
[exp]
2.64 0.9588
AT1G04920 ATSPS3F sucrose phosphate synthase 3F ... Potri.001G317600
[exp]
2.82 0.9699
AT1G62760 Plant invertase/pectin methyle... Potri.001G119300
[exp]
4.47 0.9627
AT1G52190 Major facilitator superfamily ... Potri.018G040301
[exp]
6.92 0.9358
AT1G64860 SIGB, SIG2, SIG... RNApolymerase sigma subunit 2,... Potri.013G075400
[exp]
8.71 0.9648
AT1G76110 ARID HMG (high mobility group) box ... Potri.005G246700
[exp]
10.39 0.9519
AT5G17520 MEX1, RCP1 MALTOSE EXCESS 1, root cap 1 (... Potri.013G076100
[exp]
11.31 0.9419
AT4G24120 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) Potri.001G084400
[exp]
12.00 0.9495

Potri.001G249200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.