Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29640 230 / 2e-75 JOSL JOSEPHIN-like protein (.1) AT3G54130 51 / 6e-08 Josephin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110300 [exp] 49 / 6e-07 AT3G54130 347 / 8e-121 Josephin family protein (.1) Potri.006G095700 [exp] 43 / 3e-05 AT3G54130 321 / 1e-111 Josephin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018214 [exp] 278 / 1e-96 AT2G29640 227 / 8e-74 JOSEPHIN-like protein (.1) Lus10040691 [exp] 86 / 3e-21 AT2G29640 75 / 3e-16 JOSEPHIN-like protein (.1) Lus10027757 [exp] 41 / 0.0002 AT3G54130 333 / 4e-115 Josephin family protein (.1) Lus10035536 [exp] 40 / 0.0005 AT3G54130 323 / 4e-111 Josephin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02099 [poplar] [flax] Josephin Josephin
Representative CDS sequence Show only first row Show all	>Potri.001G249400.2 pacid=42788153 polypeptide=Potri.001G249400.2.p locus=Potri.001G249400 ID=Potri.001G249400.2.v4.1 annot-version=v4.1 ATGGATAGCGAGAAGACCGAAATCTATCACGAGAAGCAGAAATTGCAATTTTGCCTCTTACATGCCCTCAACAATCTCTTCCAGCAACAGGAGGCATTTA CTCGAGCGAGATTGAATGAAATTTCTGGGAAACTTGTTCTTGATGATCCCAGCAAAAAGACTTGGACACCATTGTCTATAGTCTTCAAGCCCCACCATAA TGCTTTTACTGGAAATTACGACATTAATGTTTTAATTGCCGCTCTTGAAGAGAAAGACAAGACTGTTGTCTGGCATGACCGGCGGAATGCAGCTTCCACT ATTGATCTTGATGGGGCTGATGATAGTTTGTTTGGTATTGTCCTCAATGTTCCAGCTAGACGGTATGCATTGCTTTGGAAGGGTAGGCATTGGATTACCA TGAGAAAGATTGGTGGGGTTTGGTATAACTTGGATAGTGATCTTCCTAAGCCTATGCCCTTTGAAGGTACTCGAGAGGTTAGGGGATATTTGGATTATGT TCTAAGTAATGGTGGAGAGGTTTTGCTTGTCATGAACAAGAAAGAGTGA
AA sequence Show only first row Show all	>Potri.001G249400.2 pacid=42788153 polypeptide=Potri.001G249400.2.p locus=Potri.001G249400 ID=Potri.001G249400.2.v4.1 annot-version=v4.1 MDSEKTEIYHEKQKLQFCLLHALNNLFQQQEAFTRARLNEISGKLVLDDPSKKTWTPLSIVFKPHHNAFTGNYDINVLIAALEEKDKTVVWHDRRNAAST IDLDGADDSLFGIVLNVPARRYALLWKGRHWITMRKIGGVWYNLDSDLPKPMPFEGTREVRGYLDYVLSNGGEVLLVMNKKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Potri.001G249400 [exp]	0	1
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	6.48	0.9013
AT3G51370			Protein phosphatase 2C family ...		Potri.005G108500 [exp]	10.19	0.8740
AT1G78310			VQ motif-containing protein (....		Potri.005G162300 [exp]	18.73	0.8738
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Potri.010G239900 [exp]	19.36	0.8840	Pt-VAMP727.2
AT5G49600			Protein of unknown function, D...		Potri.010G149100 [exp]	25.80	0.8604
AT1G25520			Uncharacterized protein family...		Potri.008G117900 [exp]	28.39	0.8680
AT5G53730			Late embryogenesis abundant (L...		Potri.012G006000 [exp]	29.79	0.8771
AT3G54200			Late embryogenesis abundant (L...		Potri.016G142300 [exp]	33.58	0.8469
AT1G06050			Protein of unknown function (D...		Potri.007G130400 [exp]	43.15	0.8752
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Potri.001G129900 [exp]	57.14	0.8380

Compare expression of checked genes

Potri.001G249400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.