Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29660 352 / 8e-120 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G54630 194 / 3e-57 C2H2ZnF zinc finger protein-related (.1) AT4G27240 192 / 6e-57 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G75710 185 / 5e-54 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G11490 130 / 2e-34 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT4G22560 114 / 2e-29 unknown protein AT4G12450 109 / 2e-27 unknown protein AT1G62520 107 / 9e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G043900 [exp] 644 / 0 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.005G173400 [exp] 209 / 2e-63 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 197 / 8e-59 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.005G238300 [exp] 194 / 6e-58 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.011G131300 [exp] 194 / 1e-57 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.001G415600 [exp] 189 / 5e-56 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.002G023200 [exp] 184 / 4e-54 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.004G030800 [exp] 175 / 9e-51 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.003G111800 [exp] 129 / 1e-34 AT4G22560 263 / 3e-88 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018219 [exp] 395 / 4e-136 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1) Lus10040685 [exp] 383 / 2e-131 AT2G29660 322 / 9e-108 zinc finger (C2H2 type) family protein (.1) Lus10033148 [exp] 209 / 2e-63 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 209 / 2e-63 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10024333 [exp] 196 / 2e-60 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10043080 [exp] 199 / 9e-60 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10025632 [exp] 187 / 6e-55 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10028083 [exp] 186 / 1e-54 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10018388 [exp] 147 / 3e-40 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10007625 [exp] 137 / 2e-35 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G249900.1 pacid=42789880 polypeptide=Potri.001G249900.1.p locus=Potri.001G249900 ID=Potri.001G249900.1.v4.1 annot-version=v4.1 ATGGCAACCAATAGAGGTTTAGTCTTCAACAAATTCCTCTCTTTCTTTATCCTTCTTCTCCATCTTGGTTGCTTTATTTTCAAAGCCAAATTAGATGATC GCCATCCAGCCAAGAAACGCAAAAAAGTCTCTCCTCTTGCTCCCATTTCTTCTTCTCATTCTCGCCTAAAACCCCACAAAGCTCTCTCTTCCTCTTGGTC CTACCTCAAAAGCATTTTCTCTGGTAAAACGTCCAAAACCCAAACTCAACCTGCAGCTCCGACCCTAACCTCAGCAAGATCATCACAGCAATCCATTGTC TCCATGATCCTACCTGATCAAACTCACTTGTCCGAACTTCCACCAAGGAAAAAGTCAACTGGGTCCTGCGAAGAACCCGACATCTCAACAGACCACCAAT TCTTTCCTTTGAGAAATGATATTTTTCCATGCACAGCTTGCGGTGAAGTTTTCCAGAAACCTCAGCTTCTTGAACAACATCAAGCTATCAAACATGCTGT CACACAGCTTCTAGACGGTGATTCAGGCAAGAATATAGTCGATATCATATTTAAAACTGGATGGTCTTGTAAGGAGAAGAGCCCAGAAATCCGTAGGATT TTGAAGATCCATAATAGTCCAAAGATATTGTCAAGATTTGAGGAGTACAGAGAGTTTGTCAAAACCAAAGCAGCGAGAAACAGTCCTATCAAGAGACGAG ATGAGAGGTGCATTGCTGATGGTAATGAGCTCTTGAGGTTTTTCTGCTCAACTTTTATGTGTGATTTAGGACTGAATGGGGATTCTAGTATTTGTAACCA GCAATATTGCAGTGTTTGTGGGATAATCAAGTCTGGTTTCTCACCAAAGATGGATGGAATCTCTACACTGTCTACTAGCTGGAGAGCACACATGGCGTTC CCTGAGGAGATTGAAGAGGAGTTCAAGTTCATGAACGTGAAACGGGCTATGCTAGTCTGCCGGGTCGTGGCGGGTCGGATCGGGTGTGACTTGGACGAGG ATATAGACAAGCAGGATAGTGGGTCTGATTCTGTCCTGGGAAGAGGTGGCAGTGGGATCCACACGAGGGTGGACGAGGAGGAGCTGTTGGTGTTTAATCC AAGGGCTGTACTTCCCTGCTTTGTTATTGTATATACTGTGTGA
AA sequence Show only first row Show all	>Potri.001G249900.1 pacid=42789880 polypeptide=Potri.001G249900.1.p locus=Potri.001G249900 ID=Potri.001G249900.1.v4.1 annot-version=v4.1 MATNRGLVFNKFLSFFILLLHLGCFIFKAKLDDRHPAKKRKKVSPLAPISSSHSRLKPHKALSSSWSYLKSIFSGKTSKTQTQPAAPTLTSARSSQQSIV SMILPDQTHLSELPPRKKSTGSCEEPDISTDHQFFPLRNDIFPCTACGEVFQKPQLLEQHQAIKHAVTQLLDGDSGKNIVDIIFKTGWSCKEKSPEIRRI LKIHNSPKILSRFEEYREFVKTKAARNSPIKRRDERCIADGNELLRFFCSTFMCDLGLNGDSSICNQQYCSVCGIIKSGFSPKMDGISTLSTSWRAHMAF PEEIEEEFKFMNVKRAMLVCRVVAGRIGCDLDEDIDKQDSGSDSVLGRGGSGIHTRVDEEELLVFNPRAVLPCFVIVYTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.001G249900 [exp]	0	1
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.012G018700 [exp]	3.87	0.8791
AT5G55650			unknown protein		Potri.014G167700 [exp]	4.47	0.8562
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G040700 [exp]	4.89	0.8824
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.001G047500 [exp]	6.16	0.8038
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Potri.002G111700 [exp]	9.16	0.8358
AT1G72010	TCP	TCP22	TCP family transcription facto...		Potri.019G081800 [exp]	10.39	0.8102
AT2G20560			DNAJ heat shock family protein...		Potri.007G136400 [exp]	11.48	0.8410
AT1G13920			Remorin family protein (.1)		Potri.010G160900 [exp]	15.74	0.8510
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	19.07	0.8546
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Potri.005G134200 [exp]	19.20	0.8445

Compare expression of checked genes

Potri.001G249900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.