Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58850 220 / 8e-67 MYB ATMYB119 myb domain protein 119 (.1) AT5G11050 214 / 2e-64 MYB ATMYB64 myb domain protein 64 (.1) AT4G18770 194 / 5e-57 MYB ATMYB98 myb domain protein 98 (.1) AT3G27785 187 / 2e-54 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT5G40360 162 / 1e-45 MYB ATMYB115 myb domain protein 115 (.1) AT3G09370 150 / 6e-40 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G02320 147 / 9e-39 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT2G25230 134 / 3e-36 MYB ATMYB100 myb domain protein 100 (.1) AT5G11510 139 / 4e-35 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT5G40430 130 / 8e-35 MYB ATMYB22 myb domain protein 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044100 [exp] 575 / 0 AT5G58850 224 / 5e-68 myb domain protein 119 (.1) Potri.005G118500 [exp] 194 / 5e-57 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.012G082000 [exp] 194 / 1e-56 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.015G077700 [exp] 194 / 1e-56 AT4G18770 300 / 4e-98 myb domain protein 98 (.1) Potri.001G347200 [exp] 191 / 2e-55 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.006G085600 [exp] 149 / 2e-39 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.006G241700 [exp] 141 / 1e-35 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.014G079300 [exp] 139 / 1e-35 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.018G038000 [exp] 140 / 2e-35 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018220 [exp] 247 / 1e-77 AT5G58850 257 / 7e-82 myb domain protein 119 (.1) Lus10040684 [exp] 246 / 1e-77 AT5G58850 261 / 5e-84 myb domain protein 119 (.1) Lus10005864 [exp] 216 / 3e-65 AT5G58850 209 / 3e-63 myb domain protein 119 (.1) Lus10027695 [exp] 198 / 3e-57 AT4G18770 276 / 1e-87 myb domain protein 98 (.1) Lus10042111 [exp] 188 / 1e-54 AT4G18770 249 / 8e-79 myb domain protein 98 (.1) Lus10002384 [exp] 184 / 3e-53 AT4G18770 250 / 7e-79 myb domain protein 98 (.1) Lus10039966 [exp] 177 / 2e-50 AT4G18770 256 / 2e-81 myb domain protein 98 (.1) Lus10013084 [exp] 154 / 1e-42 AT3G27785 183 / 6e-54 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10022256 [exp] 149 / 2e-40 AT3G27785 175 / 2e-50 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10025351 [exp] 148 / 4e-39 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G250000.1 pacid=42789699 polypeptide=Potri.001G250000.1.p locus=Potri.001G250000 ID=Potri.001G250000.1.v4.1 annot-version=v4.1 ATGGAAGGAGGAGGACGCGTTGGTGGCCGTCTTGGCAATCGAAATTTGCAAAACAACTGTCCCAACATCTATCCACCATTAACAGCCAGAGATAGATTTT TATTTGGTCAGAGCCATTTCACACCCCACCAAAATATTCAAAACAATGATAAAAACAAAGAAACCACTGTTTCAAACAATGGGTCGTGTGGTTTTTATCC GCCTAGTGGTGCAATTGGTGCTGTTCCATGGCAGAGCATTCAAGAGACAAGCTTTGTTGATGGTGCAATTGGTGTTGGTGGAGATGACCTTAATTGGACA TACGAGGGAAACCCTAATGGGGGTTTGAATGGAAAAGTGAGTGTTTCAGGTAAAAGTTATAAAGGGATAGGAAAGAAAACCAAGAAAGGATCCTGCGCAA CTTTGATCAAGGGGCAATGGACAGAAGAAGAAGATAGGAAGCTAATTAGGTTGGTGAAGCAATTCGGAGTGAGAAAGTGGGCTCAAATCGCTGAAAAGCT TGATGGTAGAGCTGGAAAGCAGTGTCGTGAGAGATGGCACAACCATTTAAGGCCTGATATCAAGAAGGATAGCTGGAGTGAAGAAGAGGAGAGAATAATG GTGGGAGCTCATGCTAAAGTTGGAAACCGATGGGCGGAGATTGCAAAGCTTATTCCAGGAAGAACAGAAAATGCTATAAAAAATCATTGGAATGCTACAA AAAGAAGGCAGAATTCAAGGAGAAAGCACAAGCAAAAAGAAAGCAAAAGTGGGAAAACTCAATCCTCGATACTTCAAGACTACATTCGAAGCAAGAACCT TAAAAATGCTTCAACTTCTACCCAAAGCACAACCACTACCACCAACACCCCATCAAGCTCCATATCTGAAGAACCATCGAGCCAAAACAACTATTTTCTC CCTGAATTATCAGAATCAAACACTGATGACTCTCCATCATTACTTGCACAAGCATGTAGTGATGACGAACTTATGTTCATCCAAAATTTCTTTGCCAACA AATCCAAAGACCCATCAACAGATAAAGCTGATATGGAGAATCCAATAATGGAAGTCAACAGCTTCAATGCGGATCTTTTTAATGATTCCTTGTCCTTGGA TTCTTGGGCTCATAATGATGGAAATGAAAATGGCTTTGTTTCTTCTAGTCTGAATCCAAAGTTGTGCACTAATGGTTTCCAAGGAGCGGAAGATCATACA CCCCCTCATAACCACCTCCATTCTGATCTCTATCTTTCGTATCTACTGAACGGAGCAAGTAGCGCCCCGTGTTCGTCCTCTACTGAATATGGATACAACA GCATGAACCTGGACTTGGAGATGGATCAAACTGATTCTCTCAATGGAAAGAAGGAGATGGATTTGATAGAGATGCTTTGTTCTTCTCAATTCTCTCAGGG TTGTAACAAAATGTAG
AA sequence Show only first row Show all	>Potri.001G250000.1 pacid=42789699 polypeptide=Potri.001G250000.1.p locus=Potri.001G250000 ID=Potri.001G250000.1.v4.1 annot-version=v4.1 MEGGGRVGGRLGNRNLQNNCPNIYPPLTARDRFLFGQSHFTPHQNIQNNDKNKETTVSNNGSCGFYPPSGAIGAVPWQSIQETSFVDGAIGVGGDDLNWT YEGNPNGGLNGKVSVSGKSYKGIGKKTKKGSCATLIKGQWTEEEDRKLIRLVKQFGVRKWAQIAEKLDGRAGKQCRERWHNHLRPDIKKDSWSEEEERIM VGAHAKVGNRWAEIAKLIPGRTENAIKNHWNATKRRQNSRRKHKQKESKSGKTQSSILQDYIRSKNLKNASTSTQSTTTTTNTPSSSISEEPSSQNNYFL PELSESNTDDSPSLLAQACSDDELMFIQNFFANKSKDPSTDKADMENPIMEVNSFNADLFNDSLSLDSWAHNDGNENGFVSSSLNPKLCTNGFQGAEDHT PPHNHLHSDLYLSYLLNGASSAPCSSSTEYGYNSMNLDLEMDQTDSLNGKKEMDLIEMLCSSQFSQGCNKM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Potri.001G250000 [exp]	0	1
AT5G14010	C2H2ZnF	KNUCKLES, KNU	KNUCKLES, C2H2 and C2HC zinc f...		Potri.001G324600 [exp]	5.29	0.7655
					Potri.013G013850 [exp]	27.44	0.7498
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.005G228000 [exp]	37.01	0.7388
					Potri.018G104400 [exp]	48.43	0.7209
					Potri.005G168401 [exp]	54.12	0.7285
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.003G146800 [exp]	63.57	0.7036
					Potri.007G034000 [exp]	71.41	0.7271
					Potri.001G339700 [exp]	80.94	0.5954
AT3G19230			Leucine-rich repeat (LRR) fami...		Potri.009G102300 [exp]	94.04	0.7123
					Potri.004G183401 [exp]	98.97	0.6689

Compare expression of checked genes

Potri.001G250000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.