Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07270 626 / 0 Cell division control, Cdc6 (.1) AT2G29680 621 / 0 CDC6, ATCDC6 cell division control 6 (.1.2) AT4G14700 136 / 8e-34 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G12620 123 / 1e-29 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054300 [exp] 119 / 3e-28 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009446 [exp] 672 / 0 AT2G29680 584 / 0.0 cell division control 6 (.1.2) Lus10011627 [exp] 666 / 0 AT2G29680 576 / 0.0 cell division control 6 (.1.2) Lus10000427 [exp] 149 / 3e-39 AT1G07270 150 / 1e-39 Cell division control, Cdc6 (.1) Lus10031279 [exp] 114 / 1e-26 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Lus10031848 [exp] 114 / 2e-26 AT4G14700 942 / 0.0 origin recognition complex 1 (.1) Lus10031846 [exp] 113 / 4e-26 AT4G14700 943 / 0.0 origin recognition complex 1 (.1) Lus10000556 [exp] 67 / 9e-12 AT1G08630 536 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Lus10014658 [exp] 55 / 1e-07 AT1G08630 534 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Lus10013372 [exp] 49 / 1e-05 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF09079 [poplar] [flax] Cdc6_C CDC6, C terminal winged helix domain CL0023 [poplar] [flax] P-loop_NTPase PF13401 [poplar] [flax] AAA_22 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.001G250200.1 pacid=42793148 polypeptide=Potri.001G250200.1.p locus=Potri.001G250200 ID=Potri.001G250200.1.v4.1 annot-version=v4.1 ATGCCGTCAATCGCAGGCTGCAGCTCTTCAATCATGGCCGTCAAATCGGACGAGATCTCTCGATCCAACGGTGAAACTACTCCTCAGAAACGGAGATTAA GATCTAACGCAGATCTAGTGATGCACGAGAGTCCGATTTCTTCTCCTTTGAAGCGGAAATCGCCTCGCCGATGCGTCGATTCGAGCCCTAACACTCCTAC TAATGGAATTGAGAAACTAGAAAAGAAATGCAAATCGCCTGTGAAGAAAGAATTGTCAAATAATCTCAGCGAGAAACCAAATTGGAATCCAAGAGATGTA AAGCAAGTAAGCGTTGTGAAGGAGGTGTTGCATGTGTCGACAGCACCATCTAGTGCTGTGTGCCGTGAAGATGAGCAGAAAAGGGTCTTTGATTTCTGTA AGGCGTGTATAGAGCAGGAAAAGGCTGGGAGTTTGTATGTGTGTGGGTGCCCGGGGACTGGGAAATCATTGTCGATGGAAAAAGTGAAGCAGTGTTTAGT TGATTGGGCAAAAGAGGCTGGGTTTCAGCCTCCGGATGTACTGACCATGAATTGCACTTCATTAACAAAAACATCTGAAATCTTCAAGAAGGTGATGGAG AAAAACCAGCCGGGGAAGAAAATCAATGGATCTACCTCACCTCTACAACATCTCCAGAACTTGTATTCGCAGCAACAAAAGTCACTGGGCTCCAAAATGA TGCTTATAATTGCTGATGAGTTGGATTATTTAATAACCAAGGACCGTGCTGTCCTCTATGATCTTTTCATGCTTACAACTTTCCCATTTTCTAGATGCAT ATTGATAGGAGTAGCAAATGCCATTGACCTAGCAGATCGCTTTCTTCCGAGACTTAAGTCATTGAATTGCAAACCTATGGTTATAACTTTCAGGGCCTAT TCCAAGGATCAAATCCTCAGAATACTTCAGGAGAGGCTACTGGCAGTGCCACACACGGTTTTTCACCCACATGCAATGGAACTTTGTGCCAGAAAAGTTG CAGCTGCATCTGGAGACATGCGTAAAGCCCTTTGTGTTTGCAGGAGTGCAATTGAGATTCTAGAAGCAGAACTTAGAGAATCTACGAGCATTCTACCTTC TGATAAAGAATTGTCTCAACAAAAGACAGCTCCAGCTTGTATTAAAACACATGAAAATGACATCGTGAGGATTGATCATATGGCTGTTGCTTTATCAAAA GCTTTTAGGTCACCAACAGTGGACACCATACAGTCCCTCCCTCAGCATCAACAAATGATACTGTGCGCTGCTGTGAAGTTTTTCCGTGGAGGAAAGAAGG ATACTACTGTAGGAGAGCTAAACAAATCTTACATGGAGATCTGCAAATCAACAATCATACCACCGGTTGGGATTTTGGAATTCTTGAGCATGTGCAGAGT TGTAGCTGACCAGGGGCTTCTTAAACTAGGGCAGTCTCGTGATGATAAATTAAAGAGAGTAACCTTAAAAGTAGATGAAGCAGACATCACATTTGCATTG CAGGGAGTCCGAGTCTTCCGGAATTGCCTTCAGTGA
AA sequence Show only first row Show all	>Potri.001G250200.1 pacid=42793148 polypeptide=Potri.001G250200.1.p locus=Potri.001G250200 ID=Potri.001G250200.1.v4.1 annot-version=v4.1 MPSIAGCSSSIMAVKSDEISRSNGETTPQKRRLRSNADLVMHESPISSPLKRKSPRRCVDSSPNTPTNGIEKLEKKCKSPVKKELSNNLSEKPNWNPRDV KQVSVVKEVLHVSTAPSSAVCREDEQKRVFDFCKACIEQEKAGSLYVCGCPGTGKSLSMEKVKQCLVDWAKEAGFQPPDVLTMNCTSLTKTSEIFKKVME KNQPGKKINGSTSPLQHLQNLYSQQQKSLGSKMMLIIADELDYLITKDRAVLYDLFMLTTFPFSRCILIGVANAIDLADRFLPRLKSLNCKPMVITFRAY SKDQILRILQERLLAVPHTVFHPHAMELCARKVAAASGDMRKALCVCRSAIEILEAELRESTSILPSDKELSQQKTAPACIKTHENDIVRIDHMAVALSK AFRSPTVDTIQSLPQHQQMILCAAVKFFRGGKKDTTVGELNKSYMEICKSTIIPPVGILEFLSMCRVVADQGLLKLGQSRDDKLKRVTLKVDEADITFAL QGVRVFRNCLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07270			Cell division control, Cdc6 (....		Potri.001G250200 [exp]	0	1
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	2.00	0.9558
AT2G20980		MCM10	minichromosome maintenance 10 ...		Potri.009G134500 [exp]	2.00	0.9520
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Potri.001G225600 [exp]	4.47	0.9448	SYN3.1
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	5.47	0.9471
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.006G188700 [exp]	7.74	0.9275
AT2G41450			N-acetyltransferases;N-acetylt...		Potri.006G045100 [exp]	7.93	0.9253
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	8.06	0.9289
AT2G37960			unknown protein		Potri.006G094600 [exp]	8.94	0.9242
AT3G42660			transducin family protein / WD...		Potri.012G065200 [exp]	10.39	0.9180
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Potri.008G126300 [exp]	11.40	0.9106

Compare expression of checked genes

Potri.001G250200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.