Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07230 820 / 0 NPC1 non-specific phospholipase C1 (.1) AT2G26870 622 / 0 NPC2 non-specific phospholipase C2 (.1) AT3G48610 585 / 0 NPC6 non-specific phospholipase C6 (.1) AT3G03520 555 / 0 NPC3 non-specific phospholipase C3 (.1) AT3G03530 553 / 0 NPC4 non-specific phospholipase C4 (.1) AT3G03540 529 / 0 NPC5 non-specific phospholipase C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045100 [exp] 947 / 0 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1) Potri.009G069900 [exp] 627 / 0 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.001G275500 [exp] 607 / 0 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.012G099300 [exp] 597 / 0 AT3G48610 834 / 0.0 non-specific phospholipase C6 (.1) Potri.015G097900 [exp] 592 / 0 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1) Potri.013G073600 [exp] 584 / 0 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040678 [exp] 826 / 0 AT1G07230 809 / 0.0 non-specific phospholipase C1 (.1) Lus10005860 [exp] 822 / 0 AT1G07230 810 / 0.0 non-specific phospholipase C1 (.1) Lus10035935 [exp] 580 / 0 AT3G48610 773 / 0.0 non-specific phospholipase C6 (.1) Lus10025726 [exp] 576 / 0 AT3G48610 774 / 0.0 non-specific phospholipase C6 (.1) Lus10009153 [exp] 559 / 0 AT3G03530 694 / 0.0 non-specific phospholipase C4 (.1) Lus10028492 [exp] 558 / 0 AT3G03530 689 / 0.0 non-specific phospholipase C4 (.1) Lus10036038 [exp] 345 / 4e-116 AT2G26870 423 / 1e-147 non-specific phospholipase C2 (.1) Lus10001208 [exp] 211 / 4e-66 AT1G07230 213 / 1e-67 non-specific phospholipase C1 (.1) Lus10009690 [exp] 207 / 6e-62 AT2G26870 258 / 9e-82 non-specific phospholipase C2 (.1) Lus10036039 [exp] 167 / 1e-48 AT2G26870 229 / 4e-73 non-specific phospholipase C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [poplar] [flax] Alk_phosphatase PF04185 [poplar] [flax] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Potri.001G250500.1 pacid=42790193 polypeptide=Potri.001G250500.1.p locus=Potri.001G250500 ID=Potri.001G250500.1.v4.1 annot-version=v4.1 ATGACTTCTCGTCGACTATCGCTCACCTCTTTGCTCTTTCTTTATCTAGTAGTTTCCTCTCAGTCCCTAGACTTTGATGATTTACACAAAAGACACAAAC CCAAAATCAAAGGCCCCATCAAGACCCTAGTAGTTCTCGTCATGGAGAATCGCTCCTTTGACCACGTTCTCGGCTGGCTCAAGTCAACCCGACCCGACAT CGACGGCTTATCTGGTTCCGAATCGAATCGAATCTCTGCTTCCGACCGTAACTCCGACGAAGTCTTTGTCTCCGACGACGCGGTCTTCATCGACTCGGAC CCTGGCCACTCGTTCCAGGCGATCCGAGAACAGATATTTGGGTCAAACGATAGTTTCGCTGACCCGGCTCCAATGAACGGGTTCGTGCAACAAGCGAAGA GCATGGGTGAAACCATGTCGAAAACCGTCATGAGCGGGTTCAAACCGAGTCTTTTACCGGTTTACACCGAGTTAGCGAATGAGTTCGCCGTTTTTGACCG GTGGTTCGCGTCGGTTCCCGCGTCAACTCAGCCGAACCGGTTCTATGTCCACTCAGCAACGTCACACGGAGCCATGAGTAACGTGCGGAAAGACCTTATC CATGGATTCCCTCAAAGAACGATATTCGATTCACTTGACGATAATGGCCTCAGTTTCGGGATATATTACCAAAACATCCCTGCAACCCTGTTTTTCAAAT CGTTGAGGAAATTAAAGCACTTGTTGAAGTTTCACAGTTACGAACTGAAGTTCAAATTGCATGCGAAGCTAGGGAAGTTACCTAATTATGTGGTGGTGGA GCAGAGGTACTTTGACGTGGAGTTATTTCCAGCCAATGATGATCACCCATCACATGACGTGGCAAGAGGACAGAGGTTTGTGAAGGAGGTGTATGAGATA TTGAGGAGCAGTCCGCAGTGGAAAGAGATGGCTCTTCTGATTACTTATGATGAGCATGGTGGATTTTATGATCACGTACCTACGCCCGTCAGAGGGGTAC CGAATCCGGATGGGATTATCGGGCCTGACCCTTATTATTTCCAGTTTGACCGCTTGGGTATTCGGGTTCCGACCTTTTTGATCTCTCCTTGGATTGACAA GGGTACTGTGATACACGAGCCAGATGGGCCAAGACCAGATTCACAATTTGAGCATTCTTCAATCCCTGCAACGGTGAAGAAGCTGTTTAACTTGAACTCG AATTTCTTGACAAGGAGGGATACATGGGCTGGTAGTTTTGAGAATTACTTTTACCTTCGTGACACTCCGCGTGATGATTGTCCAGAAACCCTGCCAGACG TGACAACATCATTGAGGCCATGGGGACCAAAAGAAGATGCAAGCCTCTCTGAGTTTCAAGTTGAGATGATCCAGCTTGCATCACAGCTCAATGGCGATCA TGTACTGAATGCTTACCCGGATATTGGCAAAAGCATGACAGTGGGTGAAGCCAACAGATATGCTGAGGATGCAGTTAGGAGGTTCCTTGAAGCTGGCAGG GCTGCTCTTAGAGCTGGAGCAAATGAATCTGCTATTGTCACAATGAAACCTTCCCTCACCAGCCGAGTTCCAGCGGGGGATAATGGTCGCTACCAGAAAG CCTATTAA
AA sequence Show only first row Show all	>Potri.001G250500.1 pacid=42790193 polypeptide=Potri.001G250500.1.p locus=Potri.001G250500 ID=Potri.001G250500.1.v4.1 annot-version=v4.1 MTSRRLSLTSLLFLYLVVSSQSLDFDDLHKRHKPKIKGPIKTLVVLVMENRSFDHVLGWLKSTRPDIDGLSGSESNRISASDRNSDEVFVSDDAVFIDSD PGHSFQAIREQIFGSNDSFADPAPMNGFVQQAKSMGETMSKTVMSGFKPSLLPVYTELANEFAVFDRWFASVPASTQPNRFYVHSATSHGAMSNVRKDLI HGFPQRTIFDSLDDNGLSFGIYYQNIPATLFFKSLRKLKHLLKFHSYELKFKLHAKLGKLPNYVVVEQRYFDVELFPANDDHPSHDVARGQRFVKEVYEI LRSSPQWKEMALLITYDEHGGFYDHVPTPVRGVPNPDGIIGPDPYYFQFDRLGIRVPTFLISPWIDKGTVIHEPDGPRPDSQFEHSSIPATVKKLFNLNS NFLTRRDTWAGSFENYFYLRDTPRDDCPETLPDVTTSLRPWGPKEDASLSEFQVEMIQLASQLNGDHVLNAYPDIGKSMTVGEANRYAEDAVRRFLEAGR AALRAGANESAIVTMKPSLTSRVPAGDNGRYQKAY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.001G250500 [exp]	0	1
AT2G46100			Nuclear transport factor 2 (NT...		Potri.002G162800 [exp]	2.82	0.9805
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.011G021800 [exp]	3.46	0.9709
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G123300 [exp]	4.24	0.9643
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.014G119700 [exp]	5.09	0.9755
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007350 [exp]	5.65	0.9697
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	7.14	0.9580
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.015G103800 [exp]	7.74	0.9585	LJLCB2.1
					Potri.011G070400 [exp]	9.38	0.9483
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375400 [exp]	9.74	0.9570
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176750 [exp]	10.81	0.9626

Compare expression of checked genes

Potri.001G250500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.