Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47160 344 / 4e-121 RING/U-box superfamily protein (.1.2) AT5G58787 321 / 5e-112 RING/U-box superfamily protein (.1.2) AT5G01520 319 / 5e-111 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT1G24440 198 / 2e-63 RING/U-box superfamily protein (.1) AT1G13195 192 / 5e-61 RING/U-box superfamily protein (.1.2) AT5G01960 45 / 2e-05 RING/U-box superfamily protein (.1) AT5G40250 45 / 2e-05 RING/U-box superfamily protein (.1) AT1G23980 45 / 3e-05 RING/U-box superfamily protein (.1) AT3G48030 45 / 3e-05 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G37250 44 / 3e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045400 [exp] 414 / 8e-149 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 343 / 8e-121 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 334 / 6e-117 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 325 / 3e-113 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 320 / 2e-111 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.012G093300 [exp] 221 / 2e-72 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1) Potri.010G053000 [exp] 218 / 6e-71 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.008G181300 [exp] 216 / 2e-70 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.010G052700 [exp] 213 / 6e-69 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005859 [exp] 334 / 4e-117 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2) Lus10001209 [exp] 332 / 2e-116 AT3G47160 369 / 9e-131 RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 326 / 9e-114 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10002491 [exp] 317 / 3e-110 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 218 / 4e-71 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10011390 [exp] 215 / 4e-70 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 215 / 8e-70 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 211 / 2e-68 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10006253 [exp] 200 / 8e-64 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 200 / 8e-64 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.001G250800.1 pacid=42788350 polypeptide=Potri.001G250800.1.p locus=Potri.001G250800 ID=Potri.001G250800.1.v4.1 annot-version=v4.1 ATGGGAAAGTTGTCTTTCAAGGATTCTCTCAAAGCTCTCGAAGCTGACATCCAGCACGCCAATACTCTTGCTTTAGATCATCCGAGGGAGAATGATGGAG CTCGTCTTCAGATGCGACTATCATATAGTCCAGCAGCCCAAATTTTTCTCTTTCTCGTCCAGTGGACAGATTGTAATCTTGCTGGTGCCCTGGGTTTGCT AAGAATTCTTATTTATCTTACCTATGCAGATGGGAAAACCACTATGTCTGTTCAAGAAAGGAAAGCTAGCATTGGAGAATTTTATGCGGTGATATTTCCT TCTTTGTTGCAACTTCAAGGAGGAATTACAGATGTGGAAGATAGGAAACAGAAAGAGGCATGTACTTTGAGATATAGAAGAAATGATGAGTTGGGGGATA AGGGGAAACTCTCAGAATTCGACATAGAAAGGGAAGAAGAGTGTGGGATTTGCCTGGAGATGAACAGCAAGGTTGTATTGCCTAATTGCAGTCATTCTTT GTGTTTGAGGTGCTATCAGGATTGGCTCCCGCGGTCTCAATCGTGCCCCTTCTGTCGCGGTAGTCTTAAAAGGGTCAATTCTGGTGACCTTTGGATCTAT ACAGACAACGCTGATGTTGTTGATTTATCCTCGATTATGATTCAGGATTGCAAGAGGCTATTCATGTACATCGATAAGTTGGCCCTTGTAGTTCCAGATC CTGTATATATGATCTATGATTCTCATGTGAAGTAG
AA sequence Show only first row Show all	>Potri.001G250800.1 pacid=42788350 polypeptide=Potri.001G250800.1.p locus=Potri.001G250800 ID=Potri.001G250800.1.v4.1 annot-version=v4.1 MGKLSFKDSLKALEADIQHANTLALDHPRENDGARLQMRLSYSPAAQIFLFLVQWTDCNLAGALGLLRILIYLTYADGKTTMSVQERKASIGEFYAVIFP SLLQLQGGITDVEDRKQKEACTLRYRRNDELGDKGKLSEFDIEREEECGICLEMNSKVVLPNCSHSLCLRCYQDWLPRSQSCPFCRGSLKRVNSGDLWIY TDNADVVDLSSIMIQDCKRLFMYIDKLALVVPDPVYMIYDSHVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47160			RING/U-box superfamily protein...		Potri.001G250800 [exp]	0	1
AT1G14900		HMGA	high mobility group A (.1)		Potri.017G129400 [exp]	1.00	0.8393	HMGA901
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Potri.014G075800 [exp]	2.00	0.7802
AT2G20410			RNA-binding ASCH domain protei...		Potri.019G017900 [exp]	6.00	0.7659
AT3G15358			unknown protein		Potri.011G052900 [exp]	12.36	0.7275
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.011G071700 [exp]	12.48	0.7778	HSFA4.1
AT5G03970			F-box associated ubiquitinatio...		Potri.019G013900 [exp]	14.45	0.7123
AT1G33050			unknown protein		Potri.011G149601 [exp]	22.80	0.7299
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Potri.002G122300 [exp]	24.00	0.6310
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.012G138300 [exp]	24.04	0.7061	MBD912
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Potri.005G052400 [exp]	32.83	0.7307

Compare expression of checked genes

Potri.001G250800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.