Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58760 775 / 0 DDB2 damaged DNA binding 2 (.1) AT1G80710 81 / 9e-16 DRS1 DROUGHT SENSITIVE 1 (.1) AT1G10580 50 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT3G05090 47 / 5e-05 LRS1 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 44 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 43 / 0.0004 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT2G16780 42 / 0.0007 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G112500 [exp] 84 / 7e-17 AT1G80710 512 / 1e-178 DROUGHT SENSITIVE 1 (.1) Potri.019G096900 [exp] 48 / 1e-05 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G064600 [exp] 47 / 3e-05 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G213500 [exp] 46 / 5e-05 AT2G47990 587 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.002G241800 [exp] 44 / 0.0002 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036179 [exp] 811 / 0 AT5G58760 776 / 0.0 damaged DNA binding 2 (.1) Lus10038314 [exp] 792 / 0 AT5G58760 759 / 0.0 damaged DNA binding 2 (.1) Lus10036319 [exp] 70 / 3e-12 AT1G80710 415 / 5e-139 DROUGHT SENSITIVE 1 (.1) Lus10003974 [exp] 47 / 6e-05 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006511 [exp] 46 / 7e-05 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10004167 [exp] 44 / 0.0004 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 43 / 0.0007 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G251000.1 pacid=42788847 polypeptide=Potri.001G251000.1.p locus=Potri.001G251000 ID=Potri.001G251000.1.v4.1 annot-version=v4.1 ATGGCCCCTCGGACAAGAAGAATGGCGTTTCCGAAAGTGTTGATTGAGAGAGACACCGACTCCGAGCAAAGTTCTTCATCGGACGATGAAGATGAGTTGG AAGAAGAAGATGAGGGCCCACCATCAGAACCAGAACCAGAAGAGGAGGATTCAACCAAAAATGGATACGAAGAGAGAATAGAAGAAGATTTAAGTTTAAA AAAGAAAGGAAAAGCACCCATCACTATTAGTCTCAAGAAAGTTTGCAAAGTGTGTAAGAAACCGGGACATGAAGCGGGATTTAAAGGAGCAACATACATA GATTGTCCTATGAAACCTTGCTTTCTCTGCAAAATGCCAGGCCACACTACAATGACATGCCCGCATAGAGTGGCAATTGAGCATGGTGTAATCCCAGCAC CCCGTACAAGTACTCATAATACAGTGGAATATGTCTTACAGCGCCAGCTTAGACCAAGAATCCTTCCAATAAAACCAGCATATGTTATACCAGATCAAGT TTGTTGTGCAGTTATCAGATACCACAGCAGGCGAGTAACATGTTTGGAATTTCATCCAACAAAAAATAACATCCTTTTATCTGGAGATAAGAAAGGACAA GTTGGAGTTTGGGATTTTGACAAAGTGCATGAAAGGATGGTTTATCAAAACATACACACTTGTATTGTAAATAACATGAGGTTTAAATCTACAAATGATG GTATGGTATATGCTGCATCCTCTGATGGAACAATTAGTAGCACTGATTTGGAGACTGGAATGTCATCATCTCTGATGAACCTTAATCCTAATGGCTGGCA GGGTCCAAGTAATTGGAGAATGCTTTATGGCATGGATATCAATTCAGAGAAAGGTGTTGTGCTTGTTGCTGACAACTTTGGTTTTCTCTACATGGTGGAT ACACGATCCAACAGTAAAATTGGGGAGGCAATTTTGATCCATAAGAAAGGTAGCAAAGTTGTTGGACTTCATTGCAATCCAGTTCAACCAGAGCTTCTTT TGAGCTGTGGAAATGATCATTTTGCTCGTATATGGGATATGCGTCAACTGAAAGCTGGATCATCTCTTTCTGACCTTGCACACAAACGCGTTGTTAACTC TGCATATTTTTCTCCATTGTCTGGTAGCAAGATTCTTACCACTTCACAAGACAACCGCCTGCGTATTTGGGATTCTATATTTGGAAACTTGGACTCCCCA AGCCGAGAAATCGTACACAGTCATGATTTTAACAGACATCTGACCCCTTTCCGTGCTGAATGGGATCCAAAGGATCCAACAGAGTCCCTTGCAGTTATTG GTCGCTACATAAGCGAAAATTACAATGGAGCTGCCTTGCATCCGATTGATTTTATTGACATTAGCACTGGGCAACTAGTTGCTGAAGTTATGGATCCAAA CATCACCACCATTAGTCCTGTGAACAAGCTACATCCACGAGATGATATTTTGGCATCTGGCAGTTCGAGGTCCCTTTTCATTTGGAGGCCAAAGGAGAAG TCTGAACCTGTGGAAAAGAAAGATGAAAGCAAGATTATTATTTGTGGAGGTGCTATGAAAAAGCGTAAAGGCAAGTTTCGTGGTGAAAGTGATGATGATT CTGAAGATGATGGATGTGTATCCAAGGGCAAGAATTTTCAATTTAAAAAGGCTGAATCAAAATCAGCTCCCAGACCTCGCAAGGTTAACAAATAA
AA sequence Show only first row Show all	>Potri.001G251000.1 pacid=42788847 polypeptide=Potri.001G251000.1.p locus=Potri.001G251000 ID=Potri.001G251000.1.v4.1 annot-version=v4.1 MAPRTRRMAFPKVLIERDTDSEQSSSSDDEDELEEEDEGPPSEPEPEEEDSTKNGYEERIEEDLSLKKKGKAPITISLKKVCKVCKKPGHEAGFKGATYI DCPMKPCFLCKMPGHTTMTCPHRVAIEHGVIPAPRTSTHNTVEYVLQRQLRPRILPIKPAYVIPDQVCCAVIRYHSRRVTCLEFHPTKNNILLSGDKKGQ VGVWDFDKVHERMVYQNIHTCIVNNMRFKSTNDGMVYAASSDGTISSTDLETGMSSSLMNLNPNGWQGPSNWRMLYGMDINSEKGVVLVADNFGFLYMVD TRSNSKIGEAILIHKKGSKVVGLHCNPVQPELLLSCGNDHFARIWDMRQLKAGSSLSDLAHKRVVNSAYFSPLSGSKILTTSQDNRLRIWDSIFGNLDSP SREIVHSHDFNRHLTPFRAEWDPKDPTESLAVIGRYISENYNGAALHPIDFIDISTGQLVAEVMDPNITTISPVNKLHPRDDILASGSSRSLFIWRPKEK SEPVEKKDESKIIICGGAMKKRKGKFRGESDDDSEDDGCVSKGKNFQFKKAESKSAPRPRKVNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Potri.001G251000 [exp]	0	1
AT3G55030		PGPS2	phosphatidylglycerolphosphate ...		Potri.008G046700 [exp]	11.04	0.8418
AT4G11570			Haloacid dehalogenase-like hyd...		Potri.003G127100 [exp]	13.34	0.9077
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.018G070400 [exp]	27.36	0.8743
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016900 [exp]	27.56	0.8770
AT5G58070		ATTIL	temperature-induced lipocalin ...		Potri.018G110800 [exp]	28.14	0.8737
AT1G50020			unknown protein		Potri.009G084800 [exp]	29.39	0.8811
AT2G15270			unknown protein		Potri.001G300300 [exp]	42.84	0.8221
AT2G41000			Chaperone DnaJ-domain superfam...		Potri.006G024700 [exp]	45.95	0.8733
AT1G79510			Uncharacterized conserved prot...		Potri.010G173000 [exp]	46.13	0.8678
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Potri.009G134900 [exp]	46.82	0.8642

Compare expression of checked genes

Potri.001G251000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.