Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58740 299 / 9e-106 HSP20-like chaperones superfamily protein (.1) AT4G27890 70 / 7e-15 HSP20-like chaperones superfamily protein (.1) AT5G53400 69 / 3e-14 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046000 [exp] 113 / 2e-33 AT5G58740 97 / 2e-27 HSP20-like chaperones superfamily protein (.1) Potri.015G013900 [exp] 81 / 1e-18 AT5G53400 283 / 8e-95 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.012G014100 [exp] 77 / 1e-17 AT5G53400 277 / 4e-93 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.003G100900 [exp] 72 / 1e-15 AT5G53400 232 / 2e-75 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.001G132500 [exp] 71 / 2e-15 AT5G53400 225 / 1e-73 BOBBER1, HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018234 [exp] 260 / 3e-90 AT5G58740 266 / 8e-93 HSP20-like chaperones superfamily protein (.1) Lus10040670 [exp] 208 / 4e-70 AT5G58740 216 / 2e-73 HSP20-like chaperones superfamily protein (.1) Lus10019028 [exp] 76 / 5e-17 AT5G53400 324 / 3e-111 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10005009 [exp] 73 / 1e-15 AT5G53400 306 / 2e-103 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10018250 [exp] 68 / 2e-14 AT5G53400 213 / 4e-69 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10040656 [exp] 67 / 3e-14 AT5G53400 216 / 3e-70 BOBBER1, HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF04969 [poplar] [flax] CS CS domain
Representative CDS sequence Show only first row Show all	>Potri.001G251204.1 pacid=42788390 polypeptide=Potri.001G251204.1.p locus=Potri.001G251204 ID=Potri.001G251204.1.v4.1 annot-version=v4.1 ATGGCTGAGAAATTGGCTCCTGAGAAGCGTCACAGCTTCGTCCACGACGGTAAAACTATATTTGAGTGGGATCAAACCCTTGAAGAAGTAAATATTTACA TAAATTTACCACCAAATGTTCACTCCAAGCAGTTTTACTGCAAGATTCAGTCCAAGCATGTTGAAGTTGGCATCAAAGGCAACCCTCCTTATCTCAACCA TGACCTTACTTGCCCTGTCAAGACCGATTCTTCCTTCTGGACTTTAGAGGATGATATAATGCACATAACAATGCAAAAAAGGGACAAAGGTCAGACATGG GCTTCACCGATATTGGGTGAGGGTCAACTCGATGCTTATTCCTCTGATCTTGAGCAGAAGCGACTTATGCTTCAGAGATTTCAGGAAGAGAACCCTGGCT TTGACTTCTCACAGGCTCAATTCACAGGGAACTGCCCTGATCCAAGAACTTTTATGGGTGGTATCCGCAATGATTGA
AA sequence Show only first row Show all	>Potri.001G251204.1 pacid=42788390 polypeptide=Potri.001G251204.1.p locus=Potri.001G251204 ID=Potri.001G251204.1.v4.1 annot-version=v4.1 MAEKLAPEKRHSFVHDGKTIFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSKHVEVGIKGNPPYLNHDLTCPVKTDSSFWTLEDDIMHITMQKRDKGQTW ASPILGEGQLDAYSSDLEQKRLMLQRFQEENPGFDFSQAQFTGNCPDPRTFMGGIRND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58740			HSP20-like chaperones superfam...		Potri.001G251204 [exp]	0	1
AT3G10640		VPS60.1	SNF7 family protein (.1.2)		Potri.008G018300 [exp]	3.16	0.7297
AT5G37780		ACAM-1, TCH1, C...	TOUCH 1, calmodulin 1 (.1.2.3)		Potri.015G032600 [exp]	4.47	0.6714	ACCAL.6
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Potri.003G165900 [exp]	6.32	0.6759
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Potri.006G266800 [exp]	15.96	0.6759
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	16.70	0.6087
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.003G045300 [exp]	18.49	0.6270
AT1G61700			RNA polymerases N / 8 kDa subu...		Potri.003G102900 [exp]	22.84	0.5844
AT5G40670			PQ-loop repeat family protein ...		Potri.017G070300 [exp]	24.49	0.5982
AT1G55265			Protein of unknown function, D...		Potri.001G008320 [exp]	27.23	0.6222
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Potri.006G158100 [exp]	30.62	0.5916

Compare expression of checked genes

Potri.001G251204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.