Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58730 434 / 2e-152 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 44 / 9e-05 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 43 / 0.0002 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 42 / 0.0004 STH pfkB-like carbohydrate kinase family protein (.1) AT1G50390 40 / 0.0006 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046200 [exp] 629 / 0 AT5G58730 432 / 6e-152 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 46 / 3e-05 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.005G229100 [exp] 42 / 0.0006 AT1G19600 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040669 [exp] 498 / 6e-177 AT5G58730 392 / 8e-136 pfkB-like carbohydrate kinase family protein (.1) Lus10018235 [exp] 492 / 9e-175 AT5G58730 388 / 2e-134 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 43 / 0.0004 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 42 / 0.0005 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Potri.001G251500.1 pacid=42790118 polypeptide=Potri.001G251500.1.p locus=Potri.001G251500 ID=Potri.001G251500.1.v4.1 annot-version=v4.1 ATGGTTACAACAGCGGAGTCAGCGGCCCACAAAAGCCAGCAGCAAAGCCGTGTTTTAATTGTGGGCAATTACTGCCACGATGTTTTGATCCAAAACAACG CCGTTAAAGCTGTATCGCTTGGTGGTGCAGCCTCTTTCATTTCCAATGTTTTCAATGGACTGTCAGTTTCTTGTAATTTAGTATCGAAAGTTGGGGAAGA TTTTAAATACACAGTTAGTTATACCCCAATTGTAATTCCCACTTTGAAAACTACTGTTTTTCACTCTTATTTTGATCCGGGTCTTCATGGAAATGATCAT CAAGATCGGATCTTAAAACGGGTCTGTGCTTGTGACCCGATTAGGCCATCGGATCTTCCAGATACGAGGTTCAAGTATGGAATGGGAGTTGGTGTTGGCG GGGAAATACTGCCCGAGACGCTTGAGAGAATGATTGAGATTTGTGATGTTGTATTTGCTGATATTCAAGCTTTAATCAGGGTTTTTGATAGCGTTGATGG GACTGTTAAGCTTGTTAAATTAGAGGAGACAGGCTTTTATCCGTTGTTACCCCGAATTGGGGTTTTAAAGGCGTCATCGGAGGAGGCGGTGTTTATGGAT GTGGAAGAGGTGAGGAAGTGGTGTTGTGTCGTGGTGACTAACGGGAAACATGGCTGTAAAGTGTATTGGAAAGACGGGGAGTTGGGGATTTCGCCGTTTT TGGCAAATCAAGATGATCCTACCGGTGCAGGGGATAGTTTCTTTGGTGGGTTTGTGGCGGGGTTGGTTCAAGGATTGGCTGTGCCTGATGCTGCTTTGTT GGGAAACTTGTTTGGCTCCCTTTCTGTTGAACAAGTTGGATTGCCTAAGTTTGACACGAGATTGTTGCAGAGAGTGAAGGATGAGGTGCAGAGGAGGAAG ATGCAGTGTCTGCTTCATGAAAAAAGTGATGATGAGCTGAAGTTCTTGAGGCCAGTAGGACACGAACAGTTCCATACTTTCCTTGTTGCAGCGAGATTAA TAACCCCATGTTCCATTGAAGAACATCAATGGAATTCACCAAGTTCTACCATGGAAATGGAGCAGACTGCTGTTCCACATTACACGAAGCAACCTAAATT ATTAGCTAACCCTATGTATGAAGAACCAATCCAAAGAGTTGAATGA
AA sequence Show only first row Show all	>Potri.001G251500.1 pacid=42790118 polypeptide=Potri.001G251500.1.p locus=Potri.001G251500 ID=Potri.001G251500.1.v4.1 annot-version=v4.1 MVTTAESAAHKSQQQSRVLIVGNYCHDVLIQNNAVKAVSLGGAASFISNVFNGLSVSCNLVSKVGEDFKYTVSYTPIVIPTLKTTVFHSYFDPGLHGNDH QDRILKRVCACDPIRPSDLPDTRFKYGMGVGVGGEILPETLERMIEICDVVFADIQALIRVFDSVDGTVKLVKLEETGFYPLLPRIGVLKASSEEAVFMD VEEVRKWCCVVVTNGKHGCKVYWKDGELGISPFLANQDDPTGAGDSFFGGFVAGLVQGLAVPDAALLGNLFGSLSVEQVGLPKFDTRLLQRVKDEVQRRK MQCLLHEKSDDELKFLRPVGHEQFHTFLVAARLITPCSIEEHQWNSPSSTMEMEQTAVPHYTKQPKLLANPMYEEPIQRVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58730			pfkB-like carbohydrate kinase ...		Potri.001G251500 [exp]	0	1
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.005G255200 [exp]	1.00	0.8741
AT5G06850			C2 calcium/lipid-binding plant...		Potri.006G058700 [exp]	3.87	0.8362
AT3G48990			AMP-dependent synthetase and l...		Potri.015G144700 [exp]	7.54	0.7739
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G074850 [exp]	20.00	0.8197
AT4G31140			O-Glycosyl hydrolases family 1...		Potri.006G280700 [exp]	24.73	0.8048
AT4G32190			Myosin heavy chain-related pro...		Potri.018G026300 [exp]	24.95	0.7539
AT1G25275			unknown protein		Potri.015G114500 [exp]	27.45	0.8098
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G054700 [exp]	28.26	0.7834
AT1G55340			Protein of unknown function (D...		Potri.006G233100 [exp]	30.98	0.7814
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.001G395400 [exp]	32.32	0.7757

Compare expression of checked genes

Potri.001G251500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.