Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58710 313 / 6e-110 ROC7 rotamase CYP 7 (.1) AT2G29960 307 / 1e-107 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT3G55920 259 / 3e-88 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 220 / 1e-73 ROC1 rotamase CYP 1 (.1) AT2G21130 216 / 3e-72 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 214 / 4e-71 ROC3 rotamase CYP 3 (.1.2) AT3G56070 210 / 2e-69 ROC2 rotamase cyclophilin 2 (.1.2) AT4G34960 210 / 6e-69 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34870 203 / 5e-67 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT5G13120 204 / 3e-66 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046500 [exp] 326 / 4e-115 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.010G189000 [exp] 289 / 6e-100 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G130100 [exp] 219 / 4e-73 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G021500 [exp] 218 / 6e-73 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.004G173500 [exp] 219 / 1e-72 AT4G34960 317 / 7e-111 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.019G014396 [exp] 217 / 2e-72 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.004G168800 [exp] 216 / 7e-72 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.009G132800 [exp] 216 / 2e-71 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G240200 [exp] 212 / 2e-70 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040666 [exp] 319 / 3e-112 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10018238 [exp] 319 / 3e-112 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10038315 [exp] 279 / 7e-96 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10014846 [exp] 272 / 1e-92 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10036180 [exp] 263 / 1e-89 AT2G29960 300 / 3e-104 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10030408 [exp] 255 / 2e-85 AT3G55920 333 / 5e-116 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10022012 [exp] 223 / 1e-74 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 219 / 3e-73 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10007579 [exp] 217 / 2e-72 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10017258 [exp] 214 / 3e-71 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.001G251700.1 pacid=42792078 polypeptide=Potri.001G251700.1.p locus=Potri.001G251700 ID=Potri.001G251700.1.v4.1 annot-version=v4.1 ATGGCAAGATCGGGATTGTTGGCTGTTACTCTGCTGTGGACTTTAGTCCTTCTTGGAACCCTAGCAGTCACCCAGGCGAAGAAATCGAAAGAAGATTTAA AGGAGATTACCCATAAAGTTTACTTTGATGTTGAGATTGATGGAAAACCAGCTGGTCGCATTACCATGGGACTATTTGGCAAGACAGTTCCAAAAACCGC AGAAAATTTCCGGGCACTGTGCACCGGGGAAAAGGGTATTGGAAAGGATGGGAAACCTCTTCACTACAAGGGGAATGTATTCCACAGGATTATTCCCAGC TTTATGATCCAAGGAGGTGATTTTACACTTGGTGATGGAAGAGGGGGGGAATCAATTTATGGGGAGAACTTTGCTGATGAGAATTTCAAGTTGAAGCACA CTGGACCTGGGACTTTATCAATGGCAAATGCTGGTCGTGATACAAATGGTTCACAATTCTTCATCACAACTGTGACAACTAGCTGGTTGGATGGCAGACA TGTTGTGTTTGGTAAGGTCATGTCTGGAATGGATGTGGTTTACAAGATGGAAGCTGAAGGCAGGCAAAATGGCACCCCCAAGAGCAAGGTCGTGATTGCA GACAGCGGCGAACTCCCTCTATAA
AA sequence Show only first row Show all	>Potri.001G251700.1 pacid=42792078 polypeptide=Potri.001G251700.1.p locus=Potri.001G251700 ID=Potri.001G251700.1.v4.1 annot-version=v4.1 MARSGLLAVTLLWTLVLLGTLAVTQAKKSKEDLKEITHKVYFDVEIDGKPAGRITMGLFGKTVPKTAENFRALCTGEKGIGKDGKPLHYKGNVFHRIIPS FMIQGGDFTLGDGRGGESIYGENFADENFKLKHTGPGTLSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVMSGMDVVYKMEAEGRQNGTPKSKVVIA DSGELPL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58710		ROC7	rotamase CYP 7 (.1)		Potri.001G251700 [exp]	0	1	CYP5.2
AT4G32930			unknown protein		Potri.006G233500 [exp]	1.73	0.7417
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Potri.007G024800 [exp]	10.19	0.6552	Pt-TTN5.1
AT1G54290			Translation initiation factor ...		Potri.001G418600 [exp]	15.90	0.6484
AT3G11780			MD-2-related lipid recognition...		Potri.016G067800 [exp]	23.36	0.6205
AT2G14830			Regulator of Vps4 activity in ...		Potri.009G090100 [exp]	30.46	0.6496
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.003G069900 [exp]	35.35	0.6491	SEC22.2
AT5G64130			cAMP-regulated phosphoprotein ...		Potri.004G111900 [exp]	38.98	0.6207
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.009G118500 [exp]	42.33	0.6339
AT5G17070			unknown protein		Potri.019G052400 [exp]	42.93	0.6272
AT3G05940			Protein of unknown function (D...		Potri.005G000600 [exp]	45.17	0.6361

Compare expression of checked genes

Potri.001G251700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.