Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08510 701 / 0 ATPLC2 phospholipase C 2 (.1.2.3) AT3G55940 675 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58670 659 / 0 ATPLC1 phospholipase C 1, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, phospholipase C1 (.1) AT4G38530 648 / 0 ATPLC1 phospholipase C1 (.1) AT2G40116 605 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58700 596 / 0 ATPLC4 phosphatidylinositol-speciwc phospholipase C4 (.1.2) AT5G58690 557 / 0 ATPLC5 phosphatidylinositol-speciwc phospholipase C5 (.1) AT3G47290 362 / 6e-119 ATPLC8 phosphatidylinositol-speciwc phospholipase C8 (.1) AT3G47220 338 / 8e-110 ATPLC9 phosphatidylinositol-speciwc phospholipase C9 (.1) AT3G61030 50 / 5e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G068400 [exp] 734 / 0 AT3G08510 888 / 0.0 phospholipase C 2 (.1.2.3) Potri.009G046600 [exp] 733 / 0 AT3G08510 557 / 0.0 phospholipase C 2 (.1.2.3) Potri.010G188800 [exp] 731 / 0 AT3G08510 869 / 0.0 phospholipase C 2 (.1.2.3) Potri.010G188900 [exp] 672 / 0 AT2G40116 806 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.008G068300 [exp] 669 / 0 AT2G40116 823 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.001G252100 [exp] 654 / 0 AT5G58700 791 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Potri.001G252104 [exp] 102 / 3e-26 AT3G08510 82 / 1e-19 phospholipase C 2 (.1.2.3) Potri.004G174600 [exp] 44 / 0.0004 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.005G241700 [exp] 42 / 0.001 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036182 [exp] 776 / 0 AT3G08510 669 / 0.0 phospholipase C 2 (.1.2.3) Lus10038319 [exp] 760 / 0 AT3G08510 659 / 0.0 phospholipase C 2 (.1.2.3) Lus10014845 [exp] 728 / 0 AT3G08510 866 / 0.0 phospholipase C 2 (.1.2.3) Lus10009891 [exp] 722 / 0 AT3G08510 849 / 0.0 phospholipase C 2 (.1.2.3) Lus10028287 [exp] 721 / 0 AT3G08510 840 / 0.0 phospholipase C 2 (.1.2.3) Lus10040199 [exp] 680 / 0 AT3G08510 786 / 0.0 phospholipase C 2 (.1.2.3) Lus10009894 [exp] 659 / 0 AT2G40116 824 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Lus10040664 [exp] 648 / 0 AT5G58700 744 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10018241 [exp] 469 / 1e-161 AT5G58700 532 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10018240 [exp] 400 / 7e-134 AT5G58700 473 / 1e-162 phosphatidylinositol-speciwc phospholipase C4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0384 [poplar] [flax] PLC PF00387 [poplar] [flax] PI-PLC-Y Phosphatidylinositol-specific phospholipase C, Y domain CL0384 [poplar] [flax] PLC PF00388 [poplar] [flax] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain CL0220 [poplar] [flax] EF_hand PF09279 [poplar] [flax] EF-hand_like Phosphoinositide-specific phospholipase C, efhand-like
Representative CDS sequence Show only first row Show all	>Potri.001G252300.1 pacid=42792548 polypeptide=Potri.001G252300.1.p locus=Potri.001G252300 ID=Potri.001G252300.1.v4.1 annot-version=v4.1 ATGTCTAGGCAGTCTTTCAAAGTCTGCTTCTGTTTCAGGAGAATATTCAAACTCAGGGTGCTTGAGCCTCCTGAAGAAGTCAAGATCCTTTTTGACCAAT ACTCGCAGAATGGAACCATGTCTCTTGATAATCTACGTGGTTTCTTGGTTGAGTTTCAAGGAGAGTACAATGCCACCAGGGATGATGCTCAGGCTATCTT CAATAGTCTGAAGCATCTCAACATCTTCTCAAGAAGGGGCCTCCATCTTGAAGCCTTCTTCCGATATCTTCTTGGAGACCTTAACGGACCTCTCTCTCCA TCTAGGGTGGTGCATCATGACATGACTCAACCACTGGCTCATTATTTCCTGTACACTGGCCATAACTCCTACTTGACTGGAAATCAACTAAGCAGCGATA GCAGTGTTGAACCTATTATAAAGGCTTTGAGGAGAGGTGTCAGGGTAATTGAACTAGATTTGTGGCCAGGTTCCAAGCAAGACGAGGTGGAGGTTCGCCA TGGAGGGACACTCACTAATCCAGTGGACCTCCTCAAATGCTTGAATGCCATCAAGGACAACGCTTTTCAGGCATCTGAATATCCAGTTGTGATAACCTTT GAAGACCACCTACCTGCAAATCTTCAGGATCAGGTTGCAGAGATGGTCACTAAAACATTTGGAGACATGCTGTACCGTCCCGAGACAGATCAATTACGGG AATTTCCATCACCAGAGTCATTGAAGAAAAAGGTTATGATTTCAACTAAACCACCAAAAGAGTATCTTGAAACTCCAAGCAGTAAGTCTACCAAAAGGTC AAAAATATCATCAAAGAAAGAACAATGGAATGGTGAGACAGCTTCCAAAAGTGATAGCGAAATTTGTGATAAGGATGAGGAAGACGAGGGAGAAAGTCTT CAAGAAGAAGATGAGCAGATGACAGTTCCTGAATACAGGCATTTAATTTCCATTAACGCAGGTAAGCCGAAAGGTGCATTACAAAACTGGCTCAGCATAG ATGAGAAAAAAGTAAGACGTCTAAGCCTGAGTGAACAAGAACTTGAAAATGCTACGAGAAGACATGGAGCTGACATTATCAGGTTCACACAGCGTAATTT GCTGAGAGTGTACCCCAAAGGTACACGCATTACTTCTTCTAATTACAATCCTTTTGTTGGGTGGGCGCATGGAGCTCAAATGGTTGCATTTAATATGCAG GGCTATGGGAAGCACCTGTGGGTTATGCAAGGGATGTTTAAAGCCAATGGAGGCTGTGGTTATGTAAAAAAACCTGATTTTTTATTGAGTAACGAGGTTT TCGATCCTAGTGTGCGATTACCGGTTAAGAAAATTCTGAAGGTGACAATTTACATGGGGGAAGGTTGGGATTTGGATTTTCGGCGCACGCATTTTGATAT GTATTCTCCACCAGACTTCTTTGTAAAAGTTGGAATTGCGGGAGTCCCTGCGGATAAAGCTATGTATAAAACAAAAGCAATTGAAGATGACTGGCAACCA GTGTGGAATGAGAAATTTGAGTTCAAACTTACTGTTCCTGAATTGGCTGTGCTTAGAATTACAGTCCTCGAGTACGACACGTCTGGACAGCATGACTTTG GAGGCCAGACATGTTTACCTATATCAGAGCTGAGAACTGGGATTCGAGCAATTCCATTACATGATCGTAGAGGAGATAAGTACAAGAACACAAAACTTCT CGTGCAATTTGAACTTAATTGA
AA sequence Show only first row Show all	>Potri.001G252300.1 pacid=42792548 polypeptide=Potri.001G252300.1.p locus=Potri.001G252300 ID=Potri.001G252300.1.v4.1 annot-version=v4.1 MSRQSFKVCFCFRRIFKLRVLEPPEEVKILFDQYSQNGTMSLDNLRGFLVEFQGEYNATRDDAQAIFNSLKHLNIFSRRGLHLEAFFRYLLGDLNGPLSP SRVVHHDMTQPLAHYFLYTGHNSYLTGNQLSSDSSVEPIIKALRRGVRVIELDLWPGSKQDEVEVRHGGTLTNPVDLLKCLNAIKDNAFQASEYPVVITF EDHLPANLQDQVAEMVTKTFGDMLYRPETDQLREFPSPESLKKKVMISTKPPKEYLETPSSKSTKRSKISSKKEQWNGETASKSDSEICDKDEEDEGESL QEEDEQMTVPEYRHLISINAGKPKGALQNWLSIDEKKVRRLSLSEQELENATRRHGADIIRFTQRNLLRVYPKGTRITSSNYNPFVGWAHGAQMVAFNMQ GYGKHLWVMQGMFKANGGCGYVKKPDFLLSNEVFDPSVRLPVKKILKVTIYMGEGWDLDFRRTHFDMYSPPDFFVKVGIAGVPADKAMYKTKAIEDDWQP VWNEKFEFKLTVPELAVLRITVLEYDTSGQHDFGGQTCLPISELRTGIRAIPLHDRRGDKYKNTKLLVQFELN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	0	1
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	2.23	0.9589
AT4G33490			Eukaryotic aspartyl protease f...		Potri.007G099301 [exp]	3.16	0.9677
AT3G50120			Plant protein of unknown funct...		Potri.001G071200 [exp]	3.16	0.9538
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	3.74	0.9555	Pt-VHA1.1
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Potri.001G131800 [exp]	4.24	0.9454
AT5G45540			Protein of unknown function (D...		Potri.015G059200 [exp]	4.47	0.9619
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G119900 [exp]	5.19	0.9612
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468800 [exp]	7.41	0.9535
AT4G31980			unknown protein		Potri.003G209300 [exp]	7.48	0.9550
AT3G17380			TRAF-like family protein (.1)		Potri.008G005650 [exp]	8.00	0.9591

Compare expression of checked genes

Potri.001G252300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.