Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55950 692 / 0 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT5G47850 352 / 1e-109 CCR4 CRINKLY4 related 4 (.1) AT3G59420 249 / 1e-70 ACR4 crinkly4 (.1) AT5G61350 212 / 1e-57 Protein kinase superfamily protein (.1) AT1G79620 212 / 3e-57 Leucine-rich repeat protein kinase family protein (.1) AT1G67720 211 / 3e-57 Leucine-rich repeat protein kinase family protein (.1) AT3G51550 211 / 3e-57 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT3G46290 209 / 7e-57 HERK1 hercules receptor kinase 1 (.1) AT3G58690 197 / 8e-56 Protein kinase superfamily protein (.1) AT5G24010 205 / 2e-55 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G068700 [exp] 825 / 0 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.010G188600 [exp] 803 / 0 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 417 / 3e-134 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 385 / 7e-122 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.017G029900 [exp] 300 / 2e-88 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.010G221200 [exp] 236 / 8e-67 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.007G128400 [exp] 231 / 3e-64 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.013G159500 [exp] 223 / 3e-61 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159200 [exp] 221 / 1e-60 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040663 [exp] 839 / 0 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10018242 [exp] 815 / 0 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10028285 [exp] 627 / 0 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1) Lus10029170 [exp] 395 / 9e-126 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10034646 [exp] 283 / 7e-88 AT3G55950 178 / 2e-49 CRINKLY4 related 3 (.1) Lus10012995 [exp] 271 / 4e-85 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10000764 [exp] 241 / 1e-67 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 239 / 4e-67 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10034647 [exp] 237 / 1e-65 AT1G73990 868 / 0.0 signal peptide peptidase (.1) Lus10021003 [exp] 211 / 5e-60 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0186 [poplar] [flax] Beta_propeller PF13540 [poplar] [flax] RCC1_2 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.001G252400.1 pacid=42788997 polypeptide=Potri.001G252400.1.p locus=Potri.001G252400 ID=Potri.001G252400.1.v4.1 annot-version=v4.1 ATGACAGTCAAGCTTTGCTATCTCCCCACAATCCTTTTCGTGGCTATCACCCCCTCATTGCTCCATGTTGTTGTGGTCAAAAGTCTTGGCACTGCCTCCA CCATTGCCATCACGTATAGTACTCCTACTGCCTGTGGTATCGTCGCTGGGGAACCAACCCAACGAGTTCAGTGCTACCAAAATGGTCAAGCCATTTCCTT GCAACCGAATATTTCTTTTGAAGCTATTTCTGGAGGCCTGAACTTCTTGTGTGGCCTCAGGTCTGGAGGCCTGGCTATTCTATGTTGGGAGACCGCTGCT ATATCTCATTTTTCAAGCTTGCAACCAAAGCGTATATACTACAGCAACACTGTCAGATTGACTGATCTAACAGTTGGAGATGTTCAGGTTTGTGCTAGAG AGGTCAACTCTGGCATGGTTAAGTGCTGGAGAGGAGTTGGGAGAGGTAAGTCTTCTTTTCCATCACCTGGGGTGGCTTTAAAATTTAGTACAATCACATC TGGTAGTGGCTTTACCTGTGGGATTTTGATGAATAATAGTAGAGTTCATTGTTGGGGTAATAGTGATGTGGGAACTGAGATTGAGAGACAGTTCGGCAAT TTGACTATGTTAAACTTGGTTGCTGGAGAGTCTCATGCTTGTGGATTGGCTAGGAGTGGAGTTTTGGTCTGTAAAGGGAGCAATGGTTCGGGACAATTGG ATGCTCCTTTTAATTCAACTTTTGAATTTTCAGCACTTGCACTAGGAGCAAATTTTACTTGTTCTATTGAGCAAAGAAATGGATTAGTAAAATGCTGGGG AGAAGCTAATAAATTTCAACTGGATAGTTACATATCAGAAAATGATTCACTAGATTTGATTGTTGCTGGTTTGAATTTCATATGTGGGCTTACAACAAGG AATTTATCGATGATTTGTTGGGGAATGGGATGGTCTAATGCTCTTAGTCATGGAGATGATCTTCCATTAGGAACAATAATTCCAGGTTCCTGTGTTCAGT CTTCATGCAGCACTTGTGGTATGTATCCAAATTCTGAGACTTTATGCGGTGGCTCTGGGAGTATCTGCAAATCATGCCAGATTGAACGCCCACTTGCATT GCCATTGCCACCGATAACACCACCTCCATCCGAAGAACTGCAACCAGTCCTTCAAGTGAAGTCAAGAAACAAGATTTCTTTGGTTTTTCTGATCGTCGGT TCTGTTGGTGCTTTAGCAGGGATTGGCACTATTGTTTATTTCTTAAGCATATTTTTACATAAAAGATATAGCAATACTGTCCAACCGTCAACTACTGATG TAAATTTGAATATTGGTGCTTCAGTGAACAGCGATTCTACTGCCCCACCTTTAAGATTATTTTCCATTAGGAGTTATGGCTCACGAAGGTTAGGACAGCA GAGAAACGGGTCATCTTCCAGGCGTACAGAAAAGACACAGAATTTTTCCCTATCAGAGCTTCTTACTGCTACTAACAATTTCTCATTGGAAAACAAGATT GGTTCAGGGAGCTTTGGCACTGTTTACAAAGGCGAACTTCCTGATGGTCGTGAAGTGGCCATTAAAAGAGGAGAAACTGGTATGAAGATGAGGAAACTCC AGGAGAAAGAAATTGCATTTGATTCCGAACTAGCACTTTTATCTCGGCTTCACCATAAGCATCTACTGGGGCTTATAGGTTTCTGTGAAGAAAATGATGA AAGGCTTTTGGTCTATGAGTACATGAGCAACTGGTCTCTCCATGATCATTTGCATAGCAAGGAAAATACTGAAAAGAGTAGCAGCATTTTGAATTCTTGG AAAATGAGGATCAAGATTGCATTAGACGCGGCTAGAGGAATTGAGTATCTGCACAACTATGCAGTGCCACCTATTATTCATAGAGACATCAAGTCCTCCA ATATTCTGCTTGATGCAAATTGGACAGCTAAAGTATCTGATTTTGGATTATCACTAATGGAGCCAGAATCTGATCAAGAATTCATGTCAACCAGGGCAGC TGGGACAGTAGGATATATTGATCCTGAGTATTATGTATTGAATGTGTTAACAGCAAAAAGTGATGTTTATGGTTTAGGAGTGGTATTATTAGAACTTCTG ACAGGAAAGAGGGCTGTGTTCAAGAATGATGAAGACGGTGTGGTCCCAATGGGAGTTGTAGAGTACGCAACACCATTGATAGCAAAAGGGATGCTGCAGA ATGTGCTGGATAAAAGGGTGGGGCTACCGGAGATGCAAGAGACTGAAGCAGTGGAGCTTATGGCCTATACTGCAATGCATTCTGTAAATTTGGAGGGAAA GGAGAGGCCTAATATTATTGACATAGTTGCTAATTTGGAAAGAGCACTGGCTCTCTGTGAAGAGGTCCGCACTAGTTGCTGTTCGACCACGTTCTCCATT CCTTCAGATTGA
AA sequence Show only first row Show all	>Potri.001G252400.1 pacid=42788997 polypeptide=Potri.001G252400.1.p locus=Potri.001G252400 ID=Potri.001G252400.1.v4.1 annot-version=v4.1 MTVKLCYLPTILFVAITPSLLHVVVVKSLGTASTIAITYSTPTACGIVAGEPTQRVQCYQNGQAISLQPNISFEAISGGLNFLCGLRSGGLAILCWETAA ISHFSSLQPKRIYYSNTVRLTDLTVGDVQVCAREVNSGMVKCWRGVGRGKSSFPSPGVALKFSTITSGSGFTCGILMNNSRVHCWGNSDVGTEIERQFGN LTMLNLVAGESHACGLARSGVLVCKGSNGSGQLDAPFNSTFEFSALALGANFTCSIEQRNGLVKCWGEANKFQLDSYISENDSLDLIVAGLNFICGLTTR NLSMICWGMGWSNALSHGDDLPLGTIIPGSCVQSSCSTCGMYPNSETLCGGSGSICKSCQIERPLALPLPPITPPPSEELQPVLQVKSRNKISLVFLIVG SVGALAGIGTIVYFLSIFLHKRYSNTVQPSTTDVNLNIGASVNSDSTAPPLRLFSIRSYGSRRLGQQRNGSSSRRTEKTQNFSLSELLTATNNFSLENKI GSGSFGTVYKGELPDGREVAIKRGETGMKMRKLQEKEIAFDSELALLSRLHHKHLLGLIGFCEENDERLLVYEYMSNWSLHDHLHSKENTEKSSSILNSW KMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDANWTAKVSDFGLSLMEPESDQEFMSTRAAGTVGYIDPEYYVLNVLTAKSDVYGLGVVLLELL TGKRAVFKNDEDGVVPMGVVEYATPLIAKGMLQNVLDKRVGLPEMQETEAVELMAYTAMHSVNLEGKERPNIIDIVANLERALALCEEVRTSCCSTTFSI PSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Potri.001G252400 [exp]	0	1
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Potri.001G098000 [exp]	3.74	0.9107
AT4G31980			unknown protein		Potri.003G209300 [exp]	7.07	0.9185
AT5G45540			Protein of unknown function (D...		Potri.015G107500 [exp]	7.34	0.9086
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.007G123200 [exp]	8.48	0.8856
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Potri.006G098700 [exp]	10.48	0.8857
AT2G14830			Regulator of Vps4 activity in ...		Potri.004G038600 [exp]	12.00	0.8835
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	12.64	0.9081
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.002G058700 [exp]	15.96	0.9018	ATGSL11.2
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.007G132000 [exp]	16.52	0.8967
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128300 [exp]	17.32	0.8993

Compare expression of checked genes

Potri.001G252400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.