Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29970 667 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 661 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G40130 338 / 1e-104 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G57710 187 / 4e-48 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 145 / 3e-35 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 98 / 2e-20 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 81 / 2e-15 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 81 / 3e-15 Clp amino terminal domain-containing protein (.1) AT1G74310 74 / 4e-13 HOT1, ATHSP101 heat shock protein 101 (.1) AT3G48870 74 / 5e-13 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046700 [exp] 1722 / 0 AT2G29970 658 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 798 / 0 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G188200 [exp] 796 / 0 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.018G097300 [exp] 176 / 2e-44 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 172 / 2e-43 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 139 / 4e-33 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G073800 [exp] 134 / 2e-31 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 125 / 4e-29 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G241600 [exp] 113 / 3e-25 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038320 [exp] 783 / 0 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036183 [exp] 363 / 3e-109 AT2G29970 566 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040206 [exp] 357 / 2e-105 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028281 [exp] 244 / 5e-67 AT1G07200 407 / 3e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019984 [exp] 199 / 4e-52 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 194 / 2e-50 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008902 [exp] 120 / 1e-27 AT5G57710 392 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 119 / 6e-27 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 96 / 1e-19 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028849 [exp] 92 / 2e-18 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.001G252500.1 pacid=42790552 polypeptide=Potri.001G252500.1.p locus=Potri.001G252500 ID=Potri.001G252500.1.v4.1 annot-version=v4.1 ATGCCGACGCCGGTAAGCGTAGCGAGGCAATGCTTGACAGATGAGGCAGCGCGTGCTTTGGACGAAGCTGTTGCGGTGGCGCGTCGAAGAAACCACTGCC AAACAACCTCTCTCCACGCCGTCTCCGCTCTACTAGCTCTCCCGGCCTCGACTCTCCGGGACGCCTGCTCACGTGCCACCACAAACGCGTTCTCTTCACG CCGCCAGTTTCGCGCTCTGGACCTCTCTGTTGGCGTCTCTCTTGACCGGTTACCATCTTCGAGGACTCTTGATGAGGATCCACCGATATCGAATTCCCTG ATGGCAGCGATCAAACGGTCGCAGGCGAATCAACGGAGACACCCTGATAATTTCCATTTGCACCAAATACACTGTAACCAGCAAGCGGCGTCGGTTTTGA AAGTTGAGATGAAACATTTCATTTTATCGATTTTGGATGATCCGATTGTGAGTCGGGTATTTGGGGAAGCCGGGTTTAGGAGTTATGATATAAAGATAGC AATAGTTCACCCGCCGGTTAGTCAAAGTTCGAAATACTCGCCGGTCGGGTGCGCCCCAATATTTCTATGTAACTTGCCGGGCTCGAATATTACGGGTCCG GGGCGACCACCCGGATTTAGTTTTCCTTTTAGCAGTGGGCTCGATGATGATGATGTTGGCGATGATGATGTTTGCAGGAGAATTGGTGAGGCTTTAGTGA GGAGAGATGGGAAAGGAAGAAACTTGTTACTTGTTGGGGTTTATGCAAGTAAGGCTTTAAAGGGTTTTGTTGATAGTGTAAATAAAGAAAACAAAGGAGG TGTTTTGCCTAGTGAGATTAATGGGGTGAGTGTAATTAGCATTGAAGATGAGATTATTCATTTTGTTAGTGAGCTAGGGGGCGACAAAGAGAAGATGGGA TTGAAGTTTGAGGAGTTGGGTCAGGAATTGGAGCAGTATTCAGGTCCTGGAATTGTTGTGAATTTCGGAGATATGAAGGTTTTGGTTGGTGAAAATGTGT GTGGTGATGCTGTGAGTTATTTGGTTTCAAAATTGACGAGTTTATTGGAGGGTTTTAGGGGGAAAATTTGGTTGGTGGGAACAGCAGATAGTTATGACAC ATATTTAAAGTCTGTAGGGAGGTTTTCGAGTGTGGAAAAGGATTGGGATCTTAGGGTTCTGCCTATTGCTTCTTATAAGAGTCCTGTTGGCGATTTTAGT TCAAAATCGAGCTTGTTGGGTTCTTTTGTTCCATTTGGTGGGTTCTTTTCTACACCATCTGATTTCAAAAAACCAACGAACAGCATAAATCAGTCGATTA TATGCTGTCACCTTTGCAATGCAAAGTATGAGAAAGATGTTGCTGCTATTCTGAAGATGGGGTCAACAACGTCAGTTGCTGATCAGAGCTCAGAGAAGTT ACCTTCTTTGCTACAGATGGCTGAACTTGACACGGGAAAGGCAGTGGATGCAGTCAAGACCAGAGATGATGATACAGCATTGAATGCTAAAATTTTGGGG CTGCGAAATAAATGGAATGATATCTGTCAACGTCTCCATCATGCACAGCCATTCTTCAAATTTGATGTTTCCCAGGCCACATCCCAGGTCTCCATAGCTG AGGGCTTTCAATGTGTAGCAGATGAGAAGAAGAGCAGAAGCAATAGCAGCAGCAGAGATTCCTCACTAAATGAGAGTCAATGTGTGAATCTAAATCTTGG TGTTTGTTTGAACCAGCAAAAGATCTTTCCAGCAAAACATTGTGTAGATTCTGAAACCGAGGATGTTAATCATGGATCTAAGCAACTGGAAGAAGTTCCA AGACTTAAGCAAAAAGAGAAAGAGAGCCCTTGGTTTACCCCGTGCCCCCTTTCTAATGTGAGTCTGCCCAGTGACCGGACATCATCTTCATCTGTCACTT CTGTAACCACACATTTGGGGTTGGGAACACTTTATGCTACTAGTGCTCAGGAGCATAATATTACAAAATTACGTGACCCTATGGAGCATCTTCAGCACTT CTCAGGTTCTGGTTCTGCAGAGTTTGATGACAATACTTCACTTCAGATTGCAAAATCTTCTTCCTTCTCTGGCCCTTTTTCAGGAGGGAAATTCAATTTA AGAGATTTCAAATCAGTGATGAGAGCTATTTCTGAAAAAGTTGGCTGGCAGGATAGAGCCACGTATGCTATTGGCGAAGCTGTATCCCGCTGCAAAGCAG GACATGGAAGACACCATGGTTCAAACTCCAAAGGAGATATTTCATTTATTCTACTTGGACCTGACAGGATTGGAAAGAAAAAAATTGCTTCAGCACTTGC TGAGGTAATGTTCGGCAGTACCCAAAGCTTTATATCTCTGGATTTGGGATCCCATGATAAGGTAAGCTCATCAAACTCCATATTTGACAGCCAAGAATTA CAATATGATGATGAATTAGGGAGGTCGATGACTTTTGTTGATCGTATCGCTTCAAAGTTGAGCAAGAAACCCCATTCGTTAATCTTTCTTGAAAACATAG ACAAGGCTGATCCTTTGGTCCAGCATAGCTTGTCCTACGCTTTGAGGACTGGTAGATTCCCAGATTCACGTGGAAGAGAAGTTAGCACCAACAATACCAT TTTTGTGGCAACATCAACAATCATAGTGGGTAATACGAACTTCCTGTCAGAAAACAAATCCATTAAGTTTTCCGAGGAAATGATACTTGGAGCTAAAAGC TGGCAAATGCAAATATTAGTGGAACATGCTGCGGAAGCTACCAGTAAAAGGAGTGAAATGAAGGTGAGGATTTCAAGAGAAATAACCTCTGCGGTCTCAT ATGGGAATAAAAGAAAATTAGATGCAACCAGTGACTTAATGGAGCAGGAAAGTAGCTGTGAGTCTAGCAAACAGGCCCATAAGGCATTGCGATCCTATCT GGATTTGAATCTTCCTGTAGAGGACACAGGAGAGTGTGCCAATTACGGCGACACTGACAGTGACTCCATTTCTGAAAGCTCGCAAGCTTGGTTGGAAGAT TTTTCTGATCAAGTGGATGAAAAGGTGGTATTCAAGACATTTGATTTTGATTCTCTTGCTGAAAAGATAGTGAAGGAAATCGGCAAACAATTTCAGATGG CATTCGGATATGAGATATTGTTGGAGATTGATGATGAAGTCATGGTACAAATACTTGCAGCTGCTTGGTTGTCTGAGAAGGAGAGAGCAATGGAGGACTG GATTGAAGAGGTGGTTGGGAGAGGGTTCAGAAAAGCCAAGCTGAAGTCCCAATTTAGTGCTCAGTGTGTTGTAAAGCTAGTTACTTGTAAAGGCCTTGTG CTGAAAGAGCAAGCTCCTGGAATACGCCTGCCTTCAAGAATTAATCTGTGA
AA sequence Show only first row Show all	>Potri.001G252500.1 pacid=42790552 polypeptide=Potri.001G252500.1.p locus=Potri.001G252500 ID=Potri.001G252500.1.v4.1 annot-version=v4.1 MPTPVSVARQCLTDEAARALDEAVAVARRRNHCQTTSLHAVSALLALPASTLRDACSRATTNAFSSRRQFRALDLSVGVSLDRLPSSRTLDEDPPISNSL MAAIKRSQANQRRHPDNFHLHQIHCNQQAASVLKVEMKHFILSILDDPIVSRVFGEAGFRSYDIKIAIVHPPVSQSSKYSPVGCAPIFLCNLPGSNITGP GRPPGFSFPFSSGLDDDDVGDDDVCRRIGEALVRRDGKGRNLLLVGVYASKALKGFVDSVNKENKGGVLPSEINGVSVISIEDEIIHFVSELGGDKEKMG LKFEELGQELEQYSGPGIVVNFGDMKVLVGENVCGDAVSYLVSKLTSLLEGFRGKIWLVGTADSYDTYLKSVGRFSSVEKDWDLRVLPIASYKSPVGDFS SKSSLLGSFVPFGGFFSTPSDFKKPTNSINQSIICCHLCNAKYEKDVAAILKMGSTTSVADQSSEKLPSLLQMAELDTGKAVDAVKTRDDDTALNAKILG LRNKWNDICQRLHHAQPFFKFDVSQATSQVSIAEGFQCVADEKKSRSNSSSRDSSLNESQCVNLNLGVCLNQQKIFPAKHCVDSETEDVNHGSKQLEEVP RLKQKEKESPWFTPCPLSNVSLPSDRTSSSSVTSVTTHLGLGTLYATSAQEHNITKLRDPMEHLQHFSGSGSAEFDDNTSLQIAKSSSFSGPFSGGKFNL RDFKSVMRAISEKVGWQDRATYAIGEAVSRCKAGHGRHHGSNSKGDISFILLGPDRIGKKKIASALAEVMFGSTQSFISLDLGSHDKVSSSNSIFDSQEL QYDDELGRSMTFVDRIASKLSKKPHSLIFLENIDKADPLVQHSLSYALRTGRFPDSRGREVSTNNTIFVATSTIIVGNTNFLSENKSIKFSEEMILGAKS WQMQILVEHAAEATSKRSEMKVRISREITSAVSYGNKRKLDATSDLMEQESSCESSKQAHKALRSYLDLNLPVEDTGECANYGDTDSDSISESSQAWLED FSDQVDEKVVFKTFDFDSLAEKIVKEIGKQFQMAFGYEILLEIDDEVMVQILAAAWLSEKERAMEDWIEEVVGRGFRKAKLKSQFSAQCVVKLVTCKGLV LKEQAPGIRLPSRINL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29970			Double Clp-N motif-containing ...		Potri.001G252500 [exp]	0	1
AT5G47740			Adenine nucleotide alpha hydro...		Potri.015G083100 [exp]	2.44	0.8399
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170300 [exp]	9.79	0.7790
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.008G170400 [exp]	10.90	0.7807
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.001G212000 [exp]	14.69	0.7988	SHMT9
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.001G088100 [exp]	17.14	0.7638
AT5G13950			unknown protein		Potri.014G144100 [exp]	25.53	0.7921
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.016G001100 [exp]	26.83	0.7534
					Potri.013G084650 [exp]	27.82	0.7575
					Potri.006G110601 [exp]	27.92	0.7326
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047900 [exp]	31.40	0.7591

Compare expression of checked genes

Potri.001G252500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.