Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58620 572 / 0 C3HZnF zinc finger (CCCH-type) family protein (.1) AT2G40140 479 / 1e-161 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT3G55980 400 / 4e-131 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1) AT2G41900 402 / 5e-130 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G12850 396 / 6e-128 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT4G29190 187 / 4e-53 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G19810 187 / 5e-53 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT2G25900 185 / 1e-52 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT5G07500 177 / 6e-51 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G03790 173 / 1e-47 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046800 [exp] 1117 / 0 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.010G187900 [exp] 703 / 0 AT2G40140 570 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.008G069400 [exp] 692 / 0 AT2G40140 557 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.012G145800 [exp] 669 / 0 AT2G40140 585 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.009G061000 [exp] 451 / 1e-148 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.016G053700 [exp] 449 / 4e-148 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 416 / 1e-135 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 410 / 4e-133 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 410 / 8e-133 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028970 [exp] 641 / 0 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 635 / 0 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10019709 [exp] 412 / 5e-133 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10040662 [exp] 363 / 2e-119 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1) Lus10035006 [exp] 191 / 4e-54 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 190 / 8e-54 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10017708 [exp] 174 / 7e-49 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033665 [exp] 172 / 5e-48 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 162 / 3e-44 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018243 [exp] 152 / 5e-42 AT5G58620 100 / 3e-24 zinc finger (CCCH-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.001G252600.2 pacid=42793187 polypeptide=Potri.001G252600.2.p locus=Potri.001G252600 ID=Potri.001G252600.2.v4.1 annot-version=v4.1 ATGTTTTTGAAGGTTTTATCTGTTTACAATCTTGTAGAAAAGAGACGCTGTGGAGGAGACTTTGTGATGTGCAGTGGTACAAAGAGGAAACCAACACATA CTGGTTTCAACATGGAGAATGAATTTCGAAAGGAAGACGGGGTTTGCTATGATTTCTCTGGTTTGCTTGAATTGTCTGCCTTGAATGATCTGATCGGTTT TAAGAAAGCAATTGAAGAGGAGGGTCATGATGTTGATATGCCAGGTTTGTGGTATGGAAGGAGAATTGGCTCGAAAAAGATGGGGTTCGAGGAGAGGACA CCCCTCATGATTGCTGCGTTGTTTGGAAGCAAAGATGTGTTGAATTATATCCTGGAAACAGGTCATGTAGATGTCAACAGGGGTTATGGGTCTGATGGGG CCACAGCGCTTCACTGTGCTGCTGCAGGTGGCTCTTCCTCTGCACCTGAGGTTGCCAGGCTCTTGCTTGATGCCTCCGCTGATCCTAATTCTGTTGATGC CAATGGAAATCTCCCTGGTGACTTGATTGCTCCAGTTGTCAAGTCTGGTTCTAATTCAAGGAGAAAGACCCTGGAGATCATGTTAAAGGGTGGTACCAGT GGTGAAGAAACATGTGTTTTGGCTGATCAAATTGCAGATGAGATGGATGGGATGGAACAGCAAGAAGTACCAATGCCAAGGGTATCAAAAGATGGGTCCG AGAAGAAAGAGTATCCTATTGATCTGACACTTCCGGATATTAAGAATGGGATGTATGGAACTGATGAGTTTAGAATGTATACTTTTAAGGTCAAGCCTTG CTCTAGGGCTTACTCTCATGATTGGACAGAGTGCCCATTTGTGCACCCTGGGGAGAACGCCAGGCGCCGTGACCCCAGGAAATATCACTATAGTTGTGTT CCATGTCCTGAGTTTCGAAAGGGGTCTTGCAGGCAGGGTGATGCCTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCGCAGTATAGAA CTCGTCTCTGTAAAGATGAGACAGGTTGCACTAGGAGGGTGTGTTTCTTCGCTCACAAGCCTGAAGAGCTTCGTCCCTTGTATGCCTCCACGGGTTCAGC AGTGCCTTCTCCTAGATCCTACTCTGCCAATGGTTCCACTTTTGACATGAGTTCTATTAGCCCACTTTCCCTTGGTTCTTCATCTGTCTTGATGCCATCT ACATCAACTCCACCTATGACTCCGTCTGGTTCCTCTTCACCTATGGGTGGATGGACAAACCAGTCTAATGTGGTGCCCCCTGCATTGCAGCTTCCTGGTA GCAGGTTAAAAGCTGCATTCTGTGCACGAGATATGGATTTAGACATGGAATTGCTTGGGCTTGAAAGTCACCGTCGAAGGCAACAATTGATGGATGAGAT TTCTGGTCTCTCCTCCCCTTCCAGCTGGAACAATGGTTTGTCCACTGCCTCAGCTTTTACTGCCTCTGGTGATAGAACTGGGGAGTTGAATAGGCTTGGA GGAGTGAGGCCTACTAACCTTGAAGATATGTTTGGATCCCTCGATCCTTCAATTTTGCCTCAGTTGCAGGGACTCTCACTGGATGGTTCAACAACCCATT TGCAGTCTCCTACGGGGCTGCAGATGCGCCAGAACATCAACCAGCAGCTTCGGTCCAGCTATCCCACCAGCTTCTCATCTTCTCCTGTGAGAACATCACC ATCTTTTGGAATGGATCATTCTGGAGGTGCAGCAGCAGCAGTTTTGAGTTCAAGGTCTGCTGCCTTTGCAAAGCGTAGCCAGAGCTTTGTGGAACGAAAT GCTGTGAACCGTCACCCAGTTTTTTCTTCACCAGCAAAAGTAATGCCTCCTAATCTTTCAGATTGGGGTTCCCCTGATGGCAAATTGGATTGGGGTATTC AGGGAGAAGAGCTTAATAAGCTCCGAAAGTCTGCTTCTTTTGGGTTTCGAAGCGATGGTAGCAGTTTTGCCACCGCTGCTGCCTCAGTGCCAGCAACTGT TGGTGAGCCAGACGTGTCATGGGTACAGTCCCTGGTGAAGGACACCCCTCCTGTGAAACCCGGGCCATTGGGTTTAGAGGAGCAGCAGCAGCAGCAGCAA TGTCATCTTAACATTGGAGGTTCAGAGATGCTCCCTGCTTGGGTGGAGCAGCTGTATATCGAGCAGGAGCCATTAGTGGCTTAG
AA sequence Show only first row Show all	>Potri.001G252600.2 pacid=42793187 polypeptide=Potri.001G252600.2.p locus=Potri.001G252600 ID=Potri.001G252600.2.v4.1 annot-version=v4.1 MFLKVLSVYNLVEKRRCGGDFVMCSGTKRKPTHTGFNMENEFRKEDGVCYDFSGLLELSALNDLIGFKKAIEEEGHDVDMPGLWYGRRIGSKKMGFEERT PLMIAALFGSKDVLNYILETGHVDVNRGYGSDGATALHCAAAGGSSSAPEVARLLLDASADPNSVDANGNLPGDLIAPVVKSGSNSRRKTLEIMLKGGTS GEETCVLADQIADEMDGMEQQEVPMPRVSKDGSEKKEYPIDLTLPDIKNGMYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCV PCPEFRKGSCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRRVCFFAHKPEELRPLYASTGSAVPSPRSYSANGSTFDMSSISPLSLGSSSVLMPS TSTPPMTPSGSSSPMGGWTNQSNVVPPALQLPGSRLKAAFCARDMDLDMELLGLESHRRRQQLMDEISGLSSPSSWNNGLSTASAFTASGDRTGELNRLG GVRPTNLEDMFGSLDPSILPQLQGLSLDGSTTHLQSPTGLQMRQNINQQLRSSYPTSFSSSPVRTSPSFGMDHSGGAAAAVLSSRSAAFAKRSQSFVERN AVNRHPVFSSPAKVMPPNLSDWGSPDGKLDWGIQGEELNKLRKSASFGFRSDGSSFATAAASVPATVGEPDVSWVQSLVKDTPPVKPGPLGLEEQQQQQQ CHLNIGGSEMLPAWVEQLYIEQEPLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G252600 [exp]	0	1
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	1.41	0.9098
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	3.74	0.8842
AT1G68710			ATPase E1-E2 type family prote...		Potri.012G058000 [exp]	4.47	0.8796	Pt-ALA9.2
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.001G285800 [exp]	6.00	0.8816
AT2G27090			Protein of unknown function (D...		Potri.009G159000 [exp]	6.70	0.8688
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.008G096400 [exp]	8.83	0.8353	Pt-RPK1.1
AT1G06870		Plsp2A	plastidic type I signal peptid...		Potri.014G036400 [exp]	9.53	0.8753
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.014G141400 [exp]	11.31	0.8694
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G117200 [exp]	11.48	0.8392
AT3G56680			Single-stranded nucleic acid b...		Potri.008G021900 [exp]	15.00	0.8557

Compare expression of checked genes

Potri.001G252600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.