Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FAD3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29980 538 / 0 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT5G05580 538 / 0 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT3G11170 528 / 0 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT3G12120 193 / 6e-58 FAD2 fatty acid desaturase 2 (.1.2) AT4G30950 100 / 3e-23 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187800 [exp] 553 / 0 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 553 / 0 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 548 / 0 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 537 / 0 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G046200 [exp] 197 / 2e-59 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 195 / 4e-58 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 192 / 3e-57 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 187 / 1e-55 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 142 / 6e-39 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036184 [exp] 566 / 0 AT2G29980 551 / 0.0 fatty acid desaturase 3 (.1.2) Lus10038321 [exp] 563 / 0 AT3G11170 543 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10018245 [exp] 545 / 0 AT3G11170 549 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10040660 [exp] 543 / 0 AT3G11170 546 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10027809 [exp] 542 / 0 AT5G05580 664 / 0.0 fatty acid desaturase 8 (.1.2) Lus10005039 [exp] 474 / 9e-168 AT5G05580 557 / 0.0 fatty acid desaturase 8 (.1.2) Lus10021050 [exp] 204 / 6e-62 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 200 / 9e-61 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 200 / 1e-60 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 196 / 7e-59 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [poplar] [flax] FA_desaturase Fatty acid desaturase PF11960 [poplar] [flax] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Potri.001G252900.1 pacid=42788500 polypeptide=Potri.001G252900.1.p locus=Potri.001G252900 ID=Potri.001G252900.1.v4.1 annot-version=v4.1 ATGAAGCAATCTTGTCTTGAGAGATCGAACAAGAAAGATGCTAGTAATGATACCGTTGATGGGATCGACGGTGAAGGCGATTTTGATCCAAGTGCACCTC CTCCATTCAAGATTGCTGAGATCCGAGCTGCCATTCCTAAGCATTGCTGGGTCAAGAATCCATGGAGGTCACTGAGCTATGTTTTAAGAGATGTCACTGT CGTCTTTGCCTTGGCAGCAGCTGTTCTGCGCTTGGATAGTTGGGTATTTTGGCCACTTTACTGGGCTGCCCAGGGCACAATGTTCTGGGCCATCTTTGTT CTTGGACACGACTGTGGCCATGGAAGCTTTTCCAACAATCACTTGCTAAATAATGTGGTGGGGCATGTCTTGCATTCTTCAATTCTCGTACCTTACCACG GATGGAGAATTAGCCACAGGACACACCATCAGAATCATGGCAATGTAGAAAATGATGAATCATGGGTTCCGTTGCCTGAGAAGATTTACAAGAATTTAGA CTTGCCTACTCGGATTATGAGATACACTGTGCCTCTCCCCATGTTAGCATACCCCATATATCTGTGGAGAAGAAGCCCAGGTAAAGAGGGTTCTCACTTC AATCCCTACAGTAAATTGTTCGCTCACAGTGAAAGGAAAGCTGTGTTAACCTCAACTGTCTGTTGGTCTATAATGGTTCTTCTGCTCATCTATTCATCCT ATGTTTTTGACCCTGTCCAAGTGCTTAAGATCCATGGTGTTCCGTACTTGATATTTGTTATGTGGCTGGACTTTGTTACATACCTGCACCACCATGGCCA TGAGCAGAAACTTCCCTGGTACCGCGGCAAGGAATGGAGTTATTTGCGTGGAGGGCTTACAACAGTGGATCGGGATTATGGATGGATCAACGGCATCCAC CATGACATTGGCACACACGTTATACACCATCTGTTTCCTCAGATTCCACACTACCACTTGGTAGAAGCGACAAGGGCAGCTAAGCCGGTGCTCGGAAAGT ACTATCGCGAACCTAAGAAATCTGGGCCATTTCCACTCCACTTATTCAGCAATCTAGTGAGAAGCATCAGAGAAGATCATTATGTGAGCGACACAGGAGA CGTTGTCTACTACCAGACCGACCCTCAACTGTGCACAATCAAGTCCAACTGA
AA sequence Show only first row Show all	>Potri.001G252900.1 pacid=42788500 polypeptide=Potri.001G252900.1.p locus=Potri.001G252900 ID=Potri.001G252900.1.v4.1 annot-version=v4.1 MKQSCLERSNKKDASNDTVDGIDGEGDFDPSAPPPFKIAEIRAAIPKHCWVKNPWRSLSYVLRDVTVVFALAAAVLRLDSWVFWPLYWAAQGTMFWAIFV LGHDCGHGSFSNNHLLNNVVGHVLHSSILVPYHGWRISHRTHHQNHGNVENDESWVPLPEKIYKNLDLPTRIMRYTVPLPMLAYPIYLWRRSPGKEGSHF NPYSKLFAHSERKAVLTSTVCWSIMVLLLIYSSYVFDPVQVLKIHGVPYLIFVMWLDFVTYLHHHGHEQKLPWYRGKEWSYLRGGLTTVDRDYGWINGIH HDIGTHVIHHLFPQIPHYHLVEATRAAKPVLGKYYREPKKSGPFPLHLFSNLVRSIREDHYVSDTGDVVYYQTDPQLCTIKSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29980		AtFAD3, FAD3	fatty acid desaturase 3 (.1.2)		Potri.001G252900 [exp]	0	1	FAD3.1
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.015G133800 [exp]	7.00	0.7705
AT4G30320			CAP (Cysteine-rich secretory p...		Potri.006G171300 [exp]	8.60	0.7641
AT5G65470			O-fucosyltransferase family pr...		Potri.007G011000 [exp]	9.48	0.7450
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G135500 [exp]	20.39	0.7556
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Potri.013G047200 [exp]	24.08	0.6567	Pt-CKI1.1
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	29.74	0.7622
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	34.92	0.7492
AT3G54400			Eukaryotic aspartyl protease f...		Potri.003G195500 [exp]	38.53	0.6674
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	39.24	0.7238
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.003G087600 [exp]	40.06	0.7082

Compare expression of checked genes

Potri.001G252900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.