Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34470 379 / 5e-131 Protein of unknown function (DUF803) (.1) AT1G71900 374 / 1e-129 Protein of unknown function (DUF803) (.1) AT2G21120 367 / 5e-127 Protein of unknown function (DUF803) (.1) AT4G38730 365 / 3e-126 Protein of unknown function (DUF803) (.1) AT4G09640 361 / 5e-124 Protein of unknown function (DUF803) (.1) AT3G23870 331 / 1e-112 Protein of unknown function (DUF803) (.1) AT4G13800 326 / 1e-110 Protein of unknown function (DUF803) (.1) AT3G26670 64 / 6e-11 Protein of unknown function (DUF803) (.1), Protein of unknown function (DUF803) (.2), Protein of unknown function (DUF803) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047400 [exp] 562 / 0 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1) Potri.003G009700 [exp] 384 / 1e-133 AT1G71900 463 / 9e-165 Protein of unknown function (DUF803) (.1) Potri.001G305700 [exp] 367 / 1e-126 AT2G21120 442 / 9e-157 Protein of unknown function (DUF803) (.1) Potri.019G084600 [exp] 366 / 2e-126 AT1G71900 423 / 5e-149 Protein of unknown function (DUF803) (.1) Potri.013G114100 [exp] 362 / 1e-124 AT1G71900 439 / 4e-155 Protein of unknown function (DUF803) (.1) Potri.019G001100 [exp] 352 / 7e-121 AT2G21120 433 / 5e-153 Protein of unknown function (DUF803) (.1) Potri.004G168900 [exp] 343 / 9e-118 AT2G21120 488 / 6e-175 Protein of unknown function (DUF803) (.1) Potri.001G318700 [exp] 342 / 5e-117 AT4G13800 379 / 8e-132 Protein of unknown function (DUF803) (.1) Potri.014G139700 [exp] 65 / 3e-11 AT3G26670 647 / 0.0 Protein of unknown function (DUF803) (.1), Protein of unknown function (DUF803) (.2), Protein of unknown function (DUF803) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026280 [exp] 369 / 6e-127 AT2G21120 498 / 2e-178 Protein of unknown function (DUF803) (.1) Lus10012716 [exp] 365 / 7e-126 AT2G21120 444 / 1e-157 Protein of unknown function (DUF803) (.1) Lus10006072 [exp] 362 / 2e-125 AT1G71900 503 / 0.0 Protein of unknown function (DUF803) (.1) Lus10010893 [exp] 338 / 1e-115 AT2G21120 416 / 8e-147 Protein of unknown function (DUF803) (.1) Lus10019952 [exp] 338 / 3e-115 AT1G71900 454 / 4e-161 Protein of unknown function (DUF803) (.1) Lus10015480 [exp] 333 / 1e-113 AT1G71900 548 / 0.0 Protein of unknown function (DUF803) (.1) Lus10022549 [exp] 282 / 1e-93 AT4G13800 408 / 2e-143 Protein of unknown function (DUF803) (.1) Lus10042393 [exp] 278 / 2e-92 AT4G38730 424 / 2e-150 Protein of unknown function (DUF803) (.1) Lus10016636 [exp] 232 / 7e-75 AT3G23870 312 / 2e-106 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF05653 [poplar] [flax] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Potri.001G253100.1 pacid=42791674 polypeptide=Potri.001G253100.1.p locus=Potri.001G253100 ID=Potri.001G253100.1.v4.1 annot-version=v4.1 ATGGGTTTCTCTCAAGACAATTTGAAAGGGTTTGTTTTGGCTTTGTCGTCAAGTGCGTTTATTGGTGCTAGCTTCATTATTAAAAAGAAAGGCCTTAGAA GAGCTGCTGCAGCTTCTGGTGTTAGAGCTGGTGTTGGTGGGTTCTCATATCTCTTAGAGCCACTATGGTGGTTGGGCATGATCACAATGATTGTCGGAGA GGTTGCAAACTTTGTTGCATATGCGTTTGCTCCAGCAGTTCTTGTAACCCCCCTCGGCGCGTTGAGTATTATTGTCAGTGCTGTGTTGGCTCACTTTATC TTGAATGAGAAGTTACACCAACTAGGGATCTTGGGTTGTGTGATGTGCATTGCTGGTTCTATTGTAATTGTGATCCATGCACCACAGGAGAGCCCTATAA CTTCTGTGCAGGAAATATGGAGTATGGCTACTCAACCAGCTTTTTTGCTTTATGTGGGTTCAGTGATTGTGTTGGTTTTCATTATGATCTTCCATTTTGC TCCACAATGTGGTCACTCAAATGTGTTAGTGTTCACCGGCATCTGTTCATTTATGGGTTCTCTTTCGGTGATGAGTGTTAAGGCTGTTGGAACTGCACTG AAATTAACGTTTGAAGGAAACAACCAATTACTCTATCCAGAGACTTGGTTCTTTGTGTTTATTGTGGCCACATGTGTCATCACGCAAATGAATTATCTAA ACAAGGCACTTGATACGTTCAATACTGCAGTTGTCTCCCCCATTTATTATGTCATGTTCACGTCACTTACAATTCTTGCCAGTGTAATCATGTTCAAGGA TTGGGATGGCCAGAATGTGGGAAGCATCATATCAGAAATATGTGGCTTCATTGTTGTTCTCTCAGGGACCATCGTATTACACACAACCAGAGAGTTCGAA AGAAGTTCATCCTTTAGAGGTAGTTATGCATCTTTATCCCCTACATTATCTGCCCGACTTTGCAATGGTAATGGAGAATTTATGAAGCATGAGGAAAATT TGTTACCTGATGAAGCAGTTTTCTTTCAGAGACAAGAAATGCACTAG
AA sequence Show only first row Show all	>Potri.001G253100.1 pacid=42791674 polypeptide=Potri.001G253100.1.p locus=Potri.001G253100 ID=Potri.001G253100.1.v4.1 annot-version=v4.1 MGFSQDNLKGFVLALSSSAFIGASFIIKKKGLRRAAAASGVRAGVGGFSYLLEPLWWLGMITMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFI LNEKLHQLGILGCVMCIAGSIVIVIHAPQESPITSVQEIWSMATQPAFLLYVGSVIVLVFIMIFHFAPQCGHSNVLVFTGICSFMGSLSVMSVKAVGTAL KLTFEGNNQLLYPETWFFVFIVATCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQNVGSIISEICGFIVVLSGTIVLHTTREFE RSSSFRGSYASLSPTLSARLCNGNGEFMKHEENLLPDEAVFFQRQEMH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34470			Protein of unknown function (D...		Potri.001G253100 [exp]	0	1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	2.44	0.7857	Pt-CNGC.2
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.003G096700 [exp]	2.82	0.7642	Pt-CEO1.1
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.002G221100 [exp]	3.00	0.7696
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.018G023000 [exp]	4.89	0.7772
AT1G14670			Endomembrane protein 70 protei...		Potri.012G042300 [exp]	7.00	0.7497
AT1G14780			MAC/Perforin domain-containing...		Potri.002G234700 [exp]	8.48	0.7283
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.012G138300 [exp]	9.79	0.7469	MBD912
AT4G28240			Wound-responsive family protei...		Potri.019G116300 [exp]	12.24	0.7312
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Potri.006G027700 [exp]	14.00	0.7176
AT1G65810			P-loop containing nucleoside t...		Potri.008G143000 [exp]	23.81	0.7418

Compare expression of checked genes

Potri.001G253100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.