Plant FIBer expression Database

Pt-AGT.2 (Potri.001G253300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-AGT.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G13360 703 / 0 SGAT, AGT1, AGT L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G047700
[exp]
765 / 0 AT2G13360 707 / 0.0 L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009710
[exp]
731 / 0 AT2G13360 742 / 0.0 L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2)
Lus10022424
[exp]
712 / 0 AT2G13360 725 / 0.0 L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00266 Aminotran_5 Aminotransferase class-V
Representative CDS sequence
>Potri.001G253300.16 pacid=42791307 polypeptide=Potri.001G253300.16.p locus=Potri.001G253300 ID=Potri.001G253300.16.v4.1 annot-version=v4.1
ATGGACTACTTTTATGGACCAGGAAGGAATCATCTGTTTGTTCCAGGGCCGGTTAATATTCCTGAATCAGTCCTGAGGGCAATGAACAGGAACAATGAGG
ATTACCGTTCTCCAGCAGTTCCAGCAATGACTAAAACTCTTCTTGAGGATGTGAAGAAGATTTTCAAGACTACCTCAGGAACTCCATTTATCATCCCAAC
CACAGGCACTGGTGCATGGGAGAGTGCACTTACCAACACATTGTCTCCTGGAGATCGAACTGTATCTTTCATGATAGGCCAATTCAGTTTGCTCTGGATT
GATCAGCAAAAACGCCTTGGTTTCAATGTTGATGTTGTAGAGAGCGACTGGGGTCAAGGTGCCAACCTTGACATCCTGGCCTCAAAACTTGCGGAAGATA
CTGCGCATACCATTAAGGCTGTTTGCATTGTTCACAATGAGACAGCAACTGGAGTTACCAACAACTTGGCTAAAGTTAGAAAAATACTTGATGACTACAG
GCATCCAGCTCTCTTCCTTGTTGATGGAGTGTCCTCCATTTGTGCTCTTGATTTCCGTATGGATGAATGGGGAGTAGATGTGGCTTTAACCGGCTCTCAA
AAGGCTCTCTCTCTTCCTACCGGGATGGGTATCGTGTGTGCAAGCCCCAAAGCTCTTGAGGCATCTAAAACTGCCAAGTCGTTTAGAGTATTCTTTGACT
GGAAGGACTATTTGAAGTTCTACAAGCTTGGAACATTTTGGCCATATACACCTTCCATCCAATTGTTGTATGGACTAAGAGAAGCACTGGACCTCCTTTT
CGCGGAAGGACTCGACAATGTGATTGCAAGGCATGCTCGTCTAGGAAAAGCAACAAGGCTTGCTGTGGAGGCATGGGGTTTGAAGAACTGTACTCAAAAG
GAGGAATGGTTCAGTGACACAGTGACTGCAGTTCTTGTTCCCCCATACATTGATAGTGCAGAAATTGTTAGGAGGGGATGGAAAAGATACAACTTAAGCT
TAGGTTTGGGTCTCAACAAAGTAGCTGGCAAGGTTTTCAGAATAGGGCATCTTGGCAACCTGAACGAGTTGCAATTGTTGGGCTGCCTTGCCGGAGTGGA
GATGATACTCAAGGATGTTGGTTACCCTGTAAAGTTGGGAAGTGGAGTAGCAGCTGCTTGTGCTTATCTGCAGAACAGTACCCCTCTGATCGCTTCCAGG
ATTTGA
AA sequence
>Potri.001G253300.16 pacid=42791307 polypeptide=Potri.001G253300.16.p locus=Potri.001G253300 ID=Potri.001G253300.16.v4.1 annot-version=v4.1
MDYFYGPGRNHLFVPGPVNIPESVLRAMNRNNEDYRSPAVPAMTKTLLEDVKKIFKTTSGTPFIIPTTGTGAWESALTNTLSPGDRTVSFMIGQFSLLWI
DQQKRLGFNVDVVESDWGQGANLDILASKLAEDTAHTIKAVCIVHNETATGVTNNLAKVRKILDDYRHPALFLVDGVSSICALDFRMDEWGVDVALTGSQ
KALSLPTGMGIVCASPKALEASKTAKSFRVFFDWKDYLKFYKLGTFWPYTPSIQLLYGLREALDLLFAEGLDNVIARHARLGKATRLAVEAWGLKNCTQK
EEWFSDTVTAVLVPPYIDSAEIVRRGWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAACAYLQNSTPLIASR
I

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G13360 SGAT, AGT1, AGT L-serine:glyoxylate aminotrans... Potri.001G253300
[exp]
0 1 Pt-AGT.2
AT3G55800 SBPASE sedoheptulose-bisphosphatase (... Potri.010G193300
[exp]
1.41 0.9802
AT2G33450 Ribosomal L28 family (.1) Potri.010G068500
[exp]
2.00 0.9839
AT2G04039 unknown protein Potri.014G172800
[exp]
3.46 0.9760
Potri.005G182750
[exp]
4.24 0.9683
AT2G46320 Mitochondrial substrate carrie... Potri.002G167700
[exp]
5.19 0.9592
AT1G73885 unknown protein Potri.015G053800
[exp]
6.24 0.9777
AT5G13650 SVR3 SUPPRESSOR OF VARIEGATION 3, e... Potri.006G053000
[exp]
7.00 0.9718
AT3G56010 unknown protein Potri.008G070700
[exp]
7.21 0.9593
AT1G78510 SPS1 solanesyl diphosphate synthase... Potri.001G380500
[exp]
7.41 0.9672
AT2G32480 ARASP ARABIDOPSIS SERIN PROTEASE (.1... Potri.014G154000
[exp]
7.74 0.9726

Potri.001G253300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.