Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SRP.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48900 882 / 0 Signal recognition particle, SRP54 subunit protein (.1.2) AT5G49500 774 / 0 Signal recognition particle, SRP54 subunit protein (.1) AT1G15310 764 / 0 SRP54-1, ATHSRP54A signal recognition particle 54 kDa subunit (.1) AT5G03940 197 / 2e-56 SRP54CP, CPSRP54, FFC SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) AT5G66970 133 / 2e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45770 117 / 7e-29 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) AT4G30600 100 / 3e-22 signal recognition particle receptor alpha subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112800 [exp] 937 / 0 AT1G48900 887 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.009G047902 [exp] 469 / 1e-163 AT1G48900 487 / 7e-171 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.016G078600 [exp] 209 / 8e-61 AT5G03940 928 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.006G211500 [exp] 202 / 3e-58 AT5G03940 859 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.014G078800 [exp] 114 / 6e-28 AT2G45770 593 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.018G105900 [exp] 97 / 4e-21 AT4G30600 856 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.006G183600 [exp] 97 / 5e-21 AT4G30600 869 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.002G155400 [exp] 61 / 1e-10 AT2G45770 215 / 1e-69 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016213 [exp] 872 / 0 AT1G48900 890 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10029330 [exp] 797 / 0 AT1G48900 816 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10017023 [exp] 204 / 1e-58 AT5G03940 892 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10021346 [exp] 199 / 7e-57 AT5G03940 903 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10041358 [exp] 111 / 1e-26 AT2G45770 583 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10017891 [exp] 100 / 6e-22 AT4G30600 933 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Lus10035066 [exp] 99 / 8e-22 AT4G30600 943 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Lus10036570 [exp] 96 / 7e-21 AT2G45770 564 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02492 [poplar] [flax] cobW CobW/HypB/UreG, nucleotide-binding domain CL0023 [poplar] [flax] PF02881 [poplar] [flax] SRP54_N SRP54-type protein, helical bundle domain CL0123 [poplar] [flax] HTH PF02978 [poplar] [flax] SRP_SPB Signal peptide binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G253500.1 pacid=42787598 polypeptide=Potri.001G253500.1.p locus=Potri.001G253500 ID=Potri.001G253500.1.v4.1 annot-version=v4.1 ATGGTGTTGGCGCAGTTAGGAGGGAGCATATCCCGAGCAATCCAGCAAATGAGCAATGCAACAATCATCGACGAGAAAGCATTAAACGACTGCTTGAACG AGATCACTCGCGCGCTTCTTCAATCCGATGTCCAATTCAAGCTTGTTCGCGACATGCAAACTAATATCAAGAAAATCGTCAATCTCGACGATCTCGCTGC CGGTCACAACAAGCGCAGAATCATCCAACAAGCGATATTTAACGAGCTCTGCAAGATTTTGGACCCAGGGAAGTCCTCATTTACCCCAAAGAAGGGGAAA ACTAGTGTTGTTATGTTTGTAGGTTTACAAGGGTCTGGAAAAACGACGACGTGTACAAAATACGCTTATTATCATCAGAAAAAAGGATGGAAACCCGCCC TCGTTTGCGCTGATACGTTTAGAGCTGGTGCATTTGATCAGTTAAAGCAGAATGCAACTAAAGCTAAAATTCCATTTTATGGAAGCTATACGGAATCGGA TCCTGTAAAAATAGCTGAGGAAGGTGTAGAAACATTTAAGAAGGAAAATTGTGATCTTATAATTGTTGATACAAGTGGACGGCATAAACAGGAAGCTGCA CTTTTGGAAGAAATGCGTCAAGTTTCAGAAGCAACTAAACCGGATCTTATTATATTTGTTATGGATAGCAGTATTGGTCAAGCTGCATTTGATCAAGCTC AAGCTTTTAAGCAAATGGTTGCAGTTGGAGCTGTGATTATTACTAAAATGGATGGTCATGCAAAGGGTGGTGGTGCGCTTAGTGCAGTTGCAGCAACTAA GAGTCCTGTCATTTTTATTGGTACTGGAGAGCATATGGATGAGTTCGAAGTCTTTGATGTTAAACCTTTTGTTAGTCGCCTTTTAGGCATGGGTGACTGG TCTGGATTCATGGACAAAATTCATGAGGTTGTTCCCATGGATCAACAGCCCGAGCTTCTACAAAAGCTGTCAGAAGGGAACTTTACCTTAAGGATTATGT ATGAGCAATTCCAGAATCTACTAAAAATGGGTCCCATTGGCCAGGTATTTTCAATGCTTCCTGGGTTTAGTGCTGAATTAATGCCAAAAGGTCATGAAAA GGAAAGCCAGGCTAAGATTAAGCGATACATGACCATGATGGATTCAATGACTAATGAAGAGTTGGATAGTTCAAATCCAAAGCTCTTGAATGACTCACGA ATGATGAGGATAGCACGGGGTGCTGGCCGTCCAATTAGAGATGTAATGGAAATGTTGGAAGAGTACAAGCGACTTGCTAAAGTCTGGAGCAAAATGAAGG GGCTTAAGATTCCGAAGAAGGGTGAGATGAGTTCCCTGTCTAGAAACATGAATGCACAGCACATGAGCAAAGTCCTCCCTCCACAGATGCTGAAGCAGAT TGGTGGCATGGGTGGTTTGCAAAACTTAATGAAGCAAATGGGATCAGCTAAAGACATGATGGGCATGTTTGGAGGCGGGGACAAGTAA
AA sequence Show only first row Show all	>Potri.001G253500.1 pacid=42787598 polypeptide=Potri.001G253500.1.p locus=Potri.001G253500 ID=Potri.001G253500.1.v4.1 annot-version=v4.1 MVLAQLGGSISRAIQQMSNATIIDEKALNDCLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKILDPGKSSFTPKKGK TSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAEEGVETFKKENCDLIIVDTSGRHKQEAA LLEEMRQVSEATKPDLIIFVMDSSIGQAAFDQAQAFKQMVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNLLKMGPIGQVFSMLPGFSAELMPKGHEKESQAKIKRYMTMMDSMTNEELDSSNPKLLNDSR MMRIARGAGRPIRDVMEMLEEYKRLAKVWSKMKGLKIPKKGEMSSLSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMFGGGDK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48900			Signal recognition particle, S...		Potri.001G253500 [exp]	0	1	SRP.4
AT5G01990			Auxin efflux carrier family pr...		Potri.016G141700 [exp]	1.00	0.8933
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.014G132300 [exp]	1.73	0.8448
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.002G207865 [exp]	2.82	0.8491
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Potri.009G124900 [exp]	4.47	0.8039
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.006G086000 [exp]	5.47	0.7914
AT1G44770			unknown protein		Potri.005G176500 [exp]	11.22	0.7697
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.014G081100 [exp]	14.00	0.7743
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.004G160400 [exp]	15.87	0.7511
AT1G19025			DNA repair metallo-beta-lactam...		Potri.007G106700 [exp]	17.43	0.6935
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.009G107600 [exp]	19.59	0.7243	2OGox7

Compare expression of checked genes

Potri.001G253500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.