Plant FIBer expression Database

Potri.001G253700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09150 400 / 3e-140 ATHY2, GUN3, HY2 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G048000
[exp]
573 / 0 AT3G09150 397 / 6e-139 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009713
[exp]
453 / 5e-161 AT3G09150 383 / 1e-133 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Lus10022422
[exp]
454 / 8e-161 AT3G09150 386 / 3e-134 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05996 Fe_bilin_red Ferredoxin-dependent bilin reductase
Representative CDS sequence
>Potri.001G253700.1 pacid=42789479 polypeptide=Potri.001G253700.1.p locus=Potri.001G253700 ID=Potri.001G253700.1.v4.1 annot-version=v4.1
ATGGACTTGTGTTCTTCTTTACTAGCCTCTTGCTTATCTTCTTCACTAATAAAACCTCAGTTTCTAACCAGCAGCTTAATCACTAACAGCATCATCCCTA
ATTGCACAAGCAAGAAGTGTAAATCTCGTCATGTCTTGAAAGCCTCTGCAGGTCCCTTTTCTTACCAGAAGTTCATTCATTTCGCCCTCGACGAAACCAA
ACGGCGAACCCTTTTGGTCCCTTCTCCTCTCCAGGAGAAATATAGTTCCATGACTGCAATGGATGGAACAACAGAACTTCAAATGCTTTCATTCCAAGCC
CCCAAGATGAGACTCCTACGTAGTTTGAGCATTGAAAATGAAGCAATCCAGATTTTGGATTTTGCTGTTTTTTCCAGACCTGAATTTGATGTACCCATAT
TTTGTGCCAACTTTTTCACCACTGCTACCATGAACATCATTGTGTTGGACCTCAACCCCTTGCACAATGTCATTGACCAAAGAAACTACAAGGAAAAGTA
CTTTAAGAGATTAATTCCTTTAGGTCTCAGGTATAGCGAGCTTTTTCCTTGGGGAGGAAAGCTCACAAGCGAGTCCTTGAAGTTTTTCTCGCCGATCGTG
ATATGGACCAAGTTTCCTCCGAGTCAGGATAGATATGAATGTTTATATTCTGCTTTCAAAGAGTACTACAAGGCATGGCTTGAATTGATTGCCCAAGCAC
CAGAGGAGATAGATGCATCTTATATTAAATGCAATCGTGAAGCGCAGCATAAGTATCTAACATGGAGAGCAGAAAAGGATCCCGGCCATGGAATTCTTAA
AAGGTTGATTGGAGAAAGGCATGCACAGGACTTGGTTAGAGACTTCCTCTTCAATGGACTTGATGAACTAGGAAGTAAAGGGTTTTTGGATTACTTTCCA
GAATATCGCTGTGAAGATGGGTCTGTAAATGAGAAGCGCAGCATCCTTGGAAAGTCTTTTGAAAATCGTCCTTGGGATGCAAGAGGAGAATTCATCGGTG
ATGATATTAAAATCTAG
AA sequence
>Potri.001G253700.1 pacid=42789479 polypeptide=Potri.001G253700.1.p locus=Potri.001G253700 ID=Potri.001G253700.1.v4.1 annot-version=v4.1
MDLCSSLLASCLSSSLIKPQFLTSSLITNSIIPNCTSKKCKSRHVLKASAGPFSYQKFIHFALDETKRRTLLVPSPLQEKYSSMTAMDGTTELQMLSFQA
PKMRLLRSLSIENEAIQILDFAVFSRPEFDVPIFCANFFTTATMNIIVLDLNPLHNVIDQRNYKEKYFKRLIPLGLRYSELFPWGGKLTSESLKFFSPIV
IWTKFPPSQDRYECLYSAFKEYYKAWLELIAQAPEEIDASYIKCNREAQHKYLTWRAEKDPGHGILKRLIGERHAQDLVRDFLFNGLDELGSKGFLDYFP
EYRCEDGSVNEKRSILGKSFENRPWDARGEFIGDDIKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G09150 ATHY2, GUN3, HY... GENOMES UNCOUPLED 3, ARABIDOPS... Potri.001G253700
[exp]
0 1
AT2G44920 Tetratricopeptide repeat (TPR)... Potri.010G200000
[exp]
2.64 0.9352
AT4G19830 FKBP-like peptidyl-prolyl cis-... Potri.012G119800
[exp]
6.92 0.9056
AT1G22700 Tetratricopeptide repeat (TPR)... Potri.019G085200
[exp]
7.07 0.9014
AT5G45040 CYTC6A cytochrome c6A, Cytochrome c (... Potri.015G121101
[exp]
8.36 0.8876
AT4G01050 TROL thylakoid rhodanese-like (.1) Potri.014G096500
[exp]
9.69 0.9112
AT3G51290 Protein of unknown function (D... Potri.009G137500
[exp]
9.79 0.8836
AT1G03670 ankyrin repeat family protein ... Potri.018G078450
[exp]
10.95 0.8973
AT5G15140 Galactose mutarotase-like supe... Potri.017G080000
[exp]
12.96 0.8956
AT1G17650 GR2, GLYR2 glyoxylate reductase 2 (.1) Potri.003G036600
[exp]
17.00 0.8704
AT1G23180 ARM repeat superfamily protein... Potri.010G110200
[exp]
18.46 0.8547

Potri.001G253700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.