Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31530 399 / 8e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37660 81 / 7e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G18890 73 / 6e-14 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02240 69 / 3e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34460 67 / 2e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G18810 59 / 3e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G16720 49 / 3e-06 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT1G72640 41 / 0.0008 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086800 [exp] 80 / 1e-16 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 74 / 2e-14 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 74 / 2e-14 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G150300 [exp] 69 / 1e-12 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G079600 [exp] 57 / 6e-09 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G061200 [exp] 52 / 5e-07 AT4G18810 812 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.007G003500 [exp] 50 / 2e-06 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.014G000400 [exp] 49 / 5e-06 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022420 [exp] 431 / 5e-152 AT4G31530 415 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10009715 [exp] 403 / 3e-142 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10010846 [exp] 82 / 2e-17 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024383 [exp] 82 / 2e-17 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 75 / 2e-14 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 71 / 1e-13 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026321 [exp] 71 / 3e-13 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040884 [exp] 62 / 1e-10 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007308 [exp] 56 / 2e-08 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10029255 [exp] 56 / 3e-08 AT4G18810 851 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13460 [poplar] [flax] NAD_binding_10 NAD(P)H-binding
Representative CDS sequence Show only first row Show all	>Potri.001G253900.1 pacid=42791857 polypeptide=Potri.001G253900.1.p locus=Potri.001G253900 ID=Potri.001G253900.1.v4.1 annot-version=v4.1 ATGGCTTCCAACCTCTCCTTCACCGCCATCACTGACTTTCCACTTACACTTGGAAAATTCCCAAACCACCCTCAAAGAATCCATCCATTTCCTCTTCTAC CTCTCAATACCTCTTCCGAGTATGGCTCTTTTAAGTGCTTTGCTAGCTCTAGAAGAAGGATGACATCACCATTAGTTGCTCATGCGGTGAAAGAAGAAGT GATTGATCAGTCACCAAATTCAGAGGCTACCCTTGGCTCTGAAACCACCCCTCCTTCTTCCTCCAAGCTTGTTCTCGTCGTTGGTGGCTCTGGTGGTGTT GGGCAGCTTGTAGTGGCAGCATTGCTAAACCGGAATATTAAATCACGTTTGTTAATGCGAGATCCGGAGAAAGCAGTAGCACTGTTTGGCAAGCAAGATG AGGAGAAAATGCAGGTATATAAAGGAGACACTCGGAACCCAGAGGATCTAGATCCATCTTTGTTTGAGGGAGTCACACATGTGATCTGCTGCACTGGGAC AACAGCTTTTCCTTCAAGGCGATGGGATGGAGATAATACACCAGAAAGAACAGATTGGGAGGGTGTCAGGAATCTTGTTTCTGCATTGCCCTCAACACTT AAAAGAATTGTTCTTGTTTCATCAGTTGGTGTAACCAAATTCAACGAACTACCATGGAGCATTATGAATCTTTTTGGCGTTCTCAAGTATAAGAAAATGG GGGAAGATTTTGTTCTCAAATCTGGTCTTCCATTTACTATAATCAGACCTGCTAGATTAACAGATGGGCCTTACACATCATATGATCTAAATACCTTGCT CAAAGCTACTGCTGGGAAAAGGCGTGCAGTTGTCATTGGTCAAGGAGATAAGCTTGTTGGAGAAGTTAGCAGAATTGTGGTAGCTGAAGCTTGCATTCAG GCATTGGACATAGAATTTACCGAAGGTGAAATTTATGAAATCAACTCAGTTGAGGGAGAAGGTCCTGGATGTGATCCGCGAAAGTGGAAAGAGCTATTCA AAAATCCTCAATCACAATGA
AA sequence Show only first row Show all	>Potri.001G253900.1 pacid=42791857 polypeptide=Potri.001G253900.1.p locus=Potri.001G253900 ID=Potri.001G253900.1.v4.1 annot-version=v4.1 MASNLSFTAITDFPLTLGKFPNHPQRIHPFPLLPLNTSSEYGSFKCFASSRRRMTSPLVAHAVKEEVIDQSPNSEATLGSETTPPSSSKLVLVVGGSGGV GQLVVAALLNRNIKSRLLMRDPEKAVALFGKQDEEKMQVYKGDTRNPEDLDPSLFEGVTHVICCTGTTAFPSRRWDGDNTPERTDWEGVRNLVSALPSTL KRIVLVSSVGVTKFNELPWSIMNLFGVLKYKKMGEDFVLKSGLPFTIIRPARLTDGPYTSYDLNTLLKATAGKRRAVVIGQGDKLVGEVSRIVVAEACIQ ALDIEFTEGEIYEINSVEGEGPGCDPRKWKELFKNPQSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31530			NAD(P)-binding Rossmann-fold s...		Potri.001G253900 [exp]	0	1
AT5G58330			lactate/malate dehydrogenase f...		Potri.008G031700 [exp]	1.00	0.9918
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Potri.010G110400 [exp]	2.00	0.9878
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Potri.008G002900 [exp]	3.46	0.9793	SHMT2,SHM1.2
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.003G222200 [exp]	4.47	0.9803
AT5G20140			SOUL heme-binding family prote...		Potri.018G073501 [exp]	4.58	0.9834
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.009G047700 [exp]	5.65	0.9807
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Potri.012G068500 [exp]	8.48	0.9765
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.005G112900 [exp]	8.66	0.9744
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	9.53	0.9782
AT3G14420			Aldolase-type TIM barrel famil...		Potri.001G394400 [exp]	9.79	0.9772

Compare expression of checked genes

Potri.001G253900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.