Potri.001G254300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12400 1022 / 0 DNA binding;zinc ion binding;DNA binding (.1)
AT5G35210 253 / 2e-67 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
AT5G22760 252 / 3e-67 PHD finger family protein (.1)
AT4G14920 64 / 9e-10 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
AT5G44800 62 / 4e-09 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1)
AT1G05380 61 / 8e-09 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2)
AT3G14980 58 / 6e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
AT5G36670 57 / 1e-07 RING/FYVE/PHD zinc finger superfamily protein (.1)
AT5G36740 57 / 1e-07 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
AT5G58610 57 / 2e-07 PHD finger transcription factor, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G049100 2595 / 0 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
Potri.004G189600 271 / 3e-73 AT5G22760 879 / 0.0 PHD finger family protein (.1)
Potri.009G150200 256 / 3e-68 AT5G22760 855 / 0.0 PHD finger family protein (.1)
Potri.010G087700 66 / 2e-10 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Potri.008G152600 64 / 9e-10 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Potri.003G110100 62 / 6e-09 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
Potri.001G392801 61 / 7e-09 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Potri.001G123400 61 / 9e-09 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
Potri.009G072600 57 / 1e-07 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014918 1226 / 0 AT5G12400 1062 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
Lus10027346 1207 / 0 AT5G12400 1029 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
Lus10020532 476 / 1e-139 AT5G22760 731 / 0.0 PHD finger family protein (.1)
Lus10009383 454 / 6e-132 AT5G22760 714 / 0.0 PHD finger family protein (.1)
Lus10010562 65 / 7e-10 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Lus10006110 65 / 8e-10 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Lus10007741 61 / 1e-08 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1)
Lus10018681 60 / 3e-08 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1)
Lus10025386 58 / 7e-08 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1)
Lus10012522 57 / 1e-07 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1)
PFAM info
Representative CDS sequence
>Potri.001G254300.2 pacid=42787999 polypeptide=Potri.001G254300.2.p locus=Potri.001G254300 ID=Potri.001G254300.2.v4.1 annot-version=v4.1
ATGGAATTTGTTGGTAAATCAGTCAAGAAGAAATTTAAAGGGTTTGGTGTTTTCAAAGGAACAGTCAAATCCTACGACCCGTCGTCTGGTTTCTTCGAGG
TCAAGTACGAGGACGGCGATTTCGAGAAGCTTGGTTTCTCTGATGTTGCTTCTTTGGTAGGAGAGGATAAAGAAGCGGCCGTTGCTGCTGCTGCTGCTGC
TGTTGTCGGGCCTGTTGACCCTAAGCCTCGTTTGGGCCGGAAGCCCAAGAAGCGTCGCCGTGCTGACCCTAAGAAGCCCGAGAGCGGAGGAGAGTCAGGT
AATTCTAGGGTTGTTGAGGCTAATGGGAATTTGGATATGAATAGAAATGTTGATCTGAATGGTGGGTTTAGTGGGGATTTGAGGGAAAATGTTGATATTA
ATGTCGATTTGAATGAAACCCTAGAAAAAGGAAGTGGGATTGTGGAGAATTTGACAGAGGGGGTTTTTGATTTGAATGCTGGGTTTAATTTTGATTTAAA
CGAGGAGGGAGAGGAGGGTAATCATAATAATAATAATAATAATAACCATATTCATATTCATAATCATAATCATAGTAATCATAGTAATTTAAGTGTTGAT
TTTGAAGGGAAGAAGAGGGAGTGCATCGACTTGAATTTGGATGTGAGTGGTGATGTGGATGAGAATATTAAGGAGTTTGATTTGGAGTGTCAAGCTGCGG
AGACCCAAAAGAGGGAATGTGGGTTTGATTTGAATTTAGGGATTGATGAGGAAATTAAGGATGGGATGGATGATGGTTTTGAAGGGCAAGTGGAAGAGGC
TCCAAATTTTGAGATTCCAAGGATGGGGGAAGTTGAGAAAAGTCATATTGAAAGTGCAATTCCTAATGGGAAGTTGGAAGAAGTTCATGTTATTAATGAT
TCGTGTGTAGAGTTGGGTGGAAGGATTGAGGAGTTGAATATGGTTTCTGGTGAAGATTTTAGGGCTTGTGATTCTGTTGGAGTGATGGATGTTAAGGATG
TCAAGGAGGATTGTCCTGAGGTGATTGATTTAACAAATGGTTATAAAGAGGAGAGTGTGAGTCAGAGGAGGGGGAGGAGCAGAAGAAAGTTTGCAGATAA
TTTGAATTCTATTCCAGATGTGACTGTTCTCTTGGATACTAATGCTGTTAGGGATGAATGTTTGGTGGAGAGTGGTAGTAGGAGGCGCGGGAGGAGGAGG
AAGCTTGCAGATAATTTGAATTCTACCCTAGAAACAATAGTTCTCTCAGATGCTAATGCAGGTGGGGAAGTTTGTACAATGGGAGTTGATGGGAACTTAG
GTGATGTTGGAAGTTCATGTAAAGAGGTCAGTGGTAGTGCTAGAAAGAGGAAAAAACCTTTGGGTAATGGGAATTCTACGCAAGAAACAACCGTTTTGAG
AAGAAGTGCTCGTAGAGGGTCAACTAAAAACGACATGTCAAATGATATATCAATGTCTCCTGTAGTTAGTGCATTAATGGATGAAAAACCTGTTAAATCA
CATCATGAATGGCCTGAAGAGCCTGTGGTTCTTCCTCCTAAGTTGCAACTACCTCCTTCTTCGCAGAGTTTAGATTTGAGTGGCATTCCTGTACTTGACC
TATTCTCAGTTTATGCCTGTTTAAGATCATTTAGCACTTTGTTGTTTTTAAGTCCATTTGGGTTGGAGGAATTTGTGGCCGCTGTGAAGGGTAACTCTCC
AAGTTCACTATTTGACTGTATTCATGTTTCAATTCTGCAAACTCTAAGAAAGCATTTGGAGAACCTTTCAAATGAAGGTTCTGAATCTGCTTCTAATTGC
CTGAGGAGCCTTGATTGGGGTTTGTTGGACTTGGTTACGTGGCCTGTTTTCATGGTTGAGTACCTCTTGATCCATGGTTCAGGGTTGAAACCTGGATTTG
ATCTTAGTAGATTGAAGCTTTTCAGAAGTGACTACCACAAACAACCTGTATCTGTGAAGGTGGAGATATTAAAGTGTCTTTGTGATGACATGATTGAGGC
GGAAACCATCAGGTCGGAGCTTAATAGGAGATCTTCAGGAACTGACCCTGACATGGACTTTGATCGAAATGTGAATCTTGGGGGTTACAAGAAAAGGAAG
ACTGCGATGGATGTCTCAGGTAACTCATGCCTAACGGAGGACGCTGCTGATGACACTAATGACTGGAATAGTGATGAGTGCTGCCTTTGTAAGATGGATG
GAAATTTAATATGCTGTGATGGTTGTCCCGCCGCATATCATGCAAAGTGTGTGGGTGTTGCCAATAACTATTTGCCTGAGGGTGACTGGTATTGTCCCGA
GTGTGCGATTGACTGGCAGAAACCTTGGATGAAACCTCGAAAGTTGCTTCGAGGAGCAGAACTATTGGGAGTTGATCCTTACAACCGGCTATATTTTAGC
AGCTGTGGTTACTTGTTGGTGTCAGATTCGTGTGACACTGAATGCTCATTCAATTACTACCAAAGGGACCATCTTAGTCTTGTTATCGAAGTGCTAAAGT
CTTCAGAGATGATTTATGGTGGCATTTTGGAGGCTATCCACAAGCACTGGGACATGCATTTATATGGAGCAAGTAGCAGTTTGAGTTCCCTAAAGCATAC
AACAAGCTTAGACATGTTCATACCCCCATGTCCCTCAGCATCTTTAGATACATGTGCAACTAAAATCAAGGCTGCTGATGGACAAAACCTTGGAAAGTTT
GTTAATGGATGCTGTGGTCATCTTGATGTTGAGTTTTCAAAGTCTGCGAGCCTGACATGTATGAGTTCTGAAGGATCAGCTGAAACCATCCAAATTAGTT
CGGGGAACCAGAATTTTCAGAAAGAAGGGCCTGACTGCTCTAACAGATTTGCTGGCTTCCCAAATGAATCCGATGTTCCAGGAAAGTCCCCTCTCATGGG
AGACAATTCTATGACTTCCAACAGTTTGGATATTAAACGAGAAAAGAATCCATGTCCTCCTCCTACCAGATGTCCTTCATCTGCTGGAAATGCAAAAGCT
GAGGTCACATTACAGGTGCAGCCTGGAACTGAGTACATGAACTATTACTGTTTTGGCCATACATCTGCTTCAATTGCAGATGTGTTATTGTCTAAACCAT
CAGAGAAGACCACTGAAAACTCCATAAAATCAGATGAGGAAATGGCTTTAGCTCAGATGAAGGTCATTTTGAAGAAATCCAACAAGTTCCGTTGGTCAAG
CATTCCCTGTCTAAATGCTGAAGTCCAGAAAGGAAAATGTGGATGGTGCTTCTCTTGCAGAGCGACCACTGATGAGCCAGATTGCTTGTTTAATAAGAGT
TTGGGTCCTATTCAGGAAGGTACTGAAAGTGAGGCGATTGGTCTTCAATCAAAAAGAATCAGGAAAGGCTATCTAATAGATTTAATATATCATATTCTCT
TGATTGAACATCGACTTCAGGGGCTGCTACTGGGTCCATGGCTGAATCCGCATTATACCAAGCTTTGGCGTAAAAGCATTCTTAAGGCATCTGATATTGC
GTCTGTTAAACATTTTCTGCTAAAATTAGAGGCAAATGTGCGGCGTCTTGCACTTTCAGCAGACTGGGTGAAATACGTGGACTCTGGTGTCACAATGGGA
TCTTCTTCTCATGTTGTGACTACTTCTTCACGTGCATCTTCAAAGAATGGGATTGGCAGGAAAAGGGCTAGGTCCACAGAATTTGAGTCAAAACCCTGTG
CAAATTCTGCCAGTGGATTGAGTATGTTTTGGTGGAGGGGTGGTAGGCTTTCTCGTCGGCTGTTCAGTTGGAAGGTTTTACCTTGCTCCTTGATTTCCAA
GGCTGCCAGACAAGCTGGTTGTATGAAGATACCAGGCATATTATATCCTGAGAATTCAGATTTTGCAAAGAGAAGCAAACATGTTGCCTGGCAAGCTGCT
GTTGGGTCATCAACGACTGCAGAACAGCTTGCTTTGCAGGTTAGAGAGTTTGATTCGAATATTAGGTGGGATGAAATTGAGAACACTCATCCTTTGTCTA
TGTTGGACAAGGAACTTAGAAAATCATTCAGGCTGTTCAAGAAGGTAATTATCCGCAGGAAGTGTGTAGAAGAAGAAGGGGCTAAGTATCTTCTTGATTT
TGGCAAGAGGAGATGTATTCCTGAAGTTGTTTCAAAAAATGGGTTTATGATTGAAGAATCTTCCAGTGAAAGGAAGAAGTATTGGCTAAACGAATCTTAT
GTCCCCTTGCATCTCTTGAAAAGTTTTGAAGAGAAAAAAATTGCTCGCAGATCTAGTAAGATAAGTTCTGGGAAACTCTCTGATGCTTGTGCAGCAGTGA
ATAAGCCCTTGAAGAAAAGAGGGTTTTCTTATCTGTTTGCAAGAGCAGAAAGATCGGAGTACCATCAGTGTGGGCATTGTAAGAAAGATGTTCTAATCAG
GGAGGCTGTGTGCTGTCAGCTTTGCAAGGGATCTTTCCACAAAAGGCACGCGAGGAAGTCTGCTGGTGCCATCATGGCCAAATGTACATATACATGCCAC
CGGTGCCACTATGGAAAGAATGTGAAGAAGACAAATGCAAAAACAGTGAATATTGACAATAAAAGAGGAAAAAATAGCAAGATCACAAAAGTTCAGGAGC
GAAAATTAAAAAAGGCCACTGTAGACAGAAATTCGGTGCGACTGAAGAACAGTAAAAAAGCCTTAAAGGGTTCTCGACCAATACTATCAAGAAACAATAA
GAAGGTTACAGTTGTGCCACTACGTCGTTCGGCTAGGAAAGCTAAACAGAAAGCATTGCAGAACAAGAAGGCTCTAGGATGCAAGAGAGGAAGACCAGCC
AAATCCAAAAAGGGGGCAAATAAGAAACCAAAGAAGGGTACTTCGTTGCATAGGAAGAGAACAGATACTTATTATAGTTACTGGCTTAATGGTCTTCTGT
TGTCTAGAAAGCCAGATGATGAACGAGTGGCACATTTTAGGGAGAAAAGGTATATTGCCCAATCAGATAGTGTTATTGATGATCAACCCAAATGCCATCT
TTGCTGTGAAGCAGGATCTACATCCATTTCGAGTTATATTTCTTGTGAGATGTGTGGAGAGTGGTTTCATGGAGATGCTTTTGGACTTGATGCGGAGAAC
ATAAATAAACTTATTGGTTTTAGGTGCCATATGTGCCTTGAGAAGACTCCTCCTATCTGCCCGCATGCAGCAGCCACAAGCCATGAGTTTGAAATAGGTG
AGGTACAAAATGATGTTGAGATTGATTTCCCCAAGGAAGGGACGGATAGTATCCTACATCTAGAGGAGGATCATTCAGGTATACTTCCTGTTGACGAGTC
TGTTCATGTGGAGGGGCAATTAGGTACTGGTCTGGATTCGAATCAGAGTTTTGCGTCCAAGTCTAAGTTGGGAGCTGAAAATGGGCATGCACTTGATAAT
GTGATGGAGAATTCTGACGCAATTCAAACTTCTAATGAGAATTTGAAACCAGATTTAATAACATCATCTAATGAAAATCATATGGTCAAATAG
AA sequence
>Potri.001G254300.2 pacid=42787999 polypeptide=Potri.001G254300.2.p locus=Potri.001G254300 ID=Potri.001G254300.2.v4.1 annot-version=v4.1
MEFVGKSVKKKFKGFGVFKGTVKSYDPSSGFFEVKYEDGDFEKLGFSDVASLVGEDKEAAVAAAAAAVVGPVDPKPRLGRKPKKRRRADPKKPESGGESG
NSRVVEANGNLDMNRNVDLNGGFSGDLRENVDINVDLNETLEKGSGIVENLTEGVFDLNAGFNFDLNEEGEEGNHNNNNNNNHIHIHNHNHSNHSNLSVD
FEGKKRECIDLNLDVSGDVDENIKEFDLECQAAETQKRECGFDLNLGIDEEIKDGMDDGFEGQVEEAPNFEIPRMGEVEKSHIESAIPNGKLEEVHVIND
SCVELGGRIEELNMVSGEDFRACDSVGVMDVKDVKEDCPEVIDLTNGYKEESVSQRRGRSRRKFADNLNSIPDVTVLLDTNAVRDECLVESGSRRRGRRR
KLADNLNSTLETIVLSDANAGGEVCTMGVDGNLGDVGSSCKEVSGSARKRKKPLGNGNSTQETTVLRRSARRGSTKNDMSNDISMSPVVSALMDEKPVKS
HHEWPEEPVVLPPKLQLPPSSQSLDLSGIPVLDLFSVYACLRSFSTLLFLSPFGLEEFVAAVKGNSPSSLFDCIHVSILQTLRKHLENLSNEGSESASNC
LRSLDWGLLDLVTWPVFMVEYLLIHGSGLKPGFDLSRLKLFRSDYHKQPVSVKVEILKCLCDDMIEAETIRSELNRRSSGTDPDMDFDRNVNLGGYKKRK
TAMDVSGNSCLTEDAADDTNDWNSDECCLCKMDGNLICCDGCPAAYHAKCVGVANNYLPEGDWYCPECAIDWQKPWMKPRKLLRGAELLGVDPYNRLYFS
SCGYLLVSDSCDTECSFNYYQRDHLSLVIEVLKSSEMIYGGILEAIHKHWDMHLYGASSSLSSLKHTTSLDMFIPPCPSASLDTCATKIKAADGQNLGKF
VNGCCGHLDVEFSKSASLTCMSSEGSAETIQISSGNQNFQKEGPDCSNRFAGFPNESDVPGKSPLMGDNSMTSNSLDIKREKNPCPPPTRCPSSAGNAKA
EVTLQVQPGTEYMNYYCFGHTSASIADVLLSKPSEKTTENSIKSDEEMALAQMKVILKKSNKFRWSSIPCLNAEVQKGKCGWCFSCRATTDEPDCLFNKS
LGPIQEGTESEAIGLQSKRIRKGYLIDLIYHILLIEHRLQGLLLGPWLNPHYTKLWRKSILKASDIASVKHFLLKLEANVRRLALSADWVKYVDSGVTMG
SSSHVVTTSSRASSKNGIGRKRARSTEFESKPCANSASGLSMFWWRGGRLSRRLFSWKVLPCSLISKAARQAGCMKIPGILYPENSDFAKRSKHVAWQAA
VGSSTTAEQLALQVREFDSNIRWDEIENTHPLSMLDKELRKSFRLFKKVIIRRKCVEEEGAKYLLDFGKRRCIPEVVSKNGFMIEESSSERKKYWLNESY
VPLHLLKSFEEKKIARRSSKISSGKLSDACAAVNKPLKKRGFSYLFARAERSEYHQCGHCKKDVLIREAVCCQLCKGSFHKRHARKSAGAIMAKCTYTCH
RCHYGKNVKKTNAKTVNIDNKRGKNSKITKVQERKLKKATVDRNSVRLKNSKKALKGSRPILSRNNKKVTVVPLRRSARKAKQKALQNKKALGCKRGRPA
KSKKGANKKPKKGTSLHRKRTDTYYSYWLNGLLLSRKPDDERVAHFREKRYIAQSDSVIDDQPKCHLCCEAGSTSISSYISCEMCGEWFHGDAFGLDAEN
INKLIGFRCHMCLEKTPPICPHAAATSHEFEIGEVQNDVEIDFPKEGTDSILHLEEDHSGILPVDESVHVEGQLGTGLDSNQSFASKSKLGAENGHALDN
VMENSDAIQTSNENLKPDLITSSNENHMVK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G12400 DNA binding;zinc ion binding;D... Potri.001G254300 0 1
AT5G53440 unknown protein Potri.015G014800 1.41 0.9348
AT5G12400 DNA binding;zinc ion binding;D... Potri.009G049100 2.00 0.8977
AT1G67230 CRWN1, LINC1 CROWDED NUCLEI 1, little nucle... Potri.017G111400 2.82 0.9270
AT1G31930 XLG3 extra-large GTP-binding protei... Potri.015G031100 5.47 0.8289
AT4G14920 Acyl-CoA N-acyltransferase wit... Potri.010G087700 7.07 0.8955
AT4G15180 SDG2, ATXR3 SET domain protein 2 (.1) Potri.017G041100 7.14 0.9009
AT3G58110 unknown protein Potri.013G119700 7.93 0.8689
AT4G21430 B160 Zinc finger, RING-type;Transcr... Potri.011G041400 12.00 0.8515
AT2G16485 nucleic acid binding;zinc ion ... Potri.004G161700 12.68 0.8831
AT4G15180 SDG2, ATXR3 SET domain protein 2 (.1) Potri.007G119300 13.41 0.8874 SDG904

Potri.001G254300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.