Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08520 158 / 4e-46 V157, ALB1, ALB-1V, PDE166, CHLD PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) AT5G45930 75 / 1e-16 CHLI-2, CHLI2 magnesium chelatase i2 (.1) AT4G18480 75 / 1e-16 CHLI-1, CHL11, CH-42, CH42, CHLI1 CHLORINA 42, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G049400 [exp] 178 / 3e-53 AT1G08520 604 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.011G063400 [exp] 76 / 6e-17 AT5G45930 605 / 0.0 magnesium chelatase i2 (.1) Potri.004G053400 [exp] 75 / 1e-16 AT5G45930 598 / 0.0 magnesium chelatase i2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019033 [exp] 173 / 2e-51 AT1G08520 1163 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Lus10005013 [exp] 172 / 5e-51 AT1G08520 1146 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Lus10025423 [exp] 76 / 9e-17 AT5G45930 638 / 0.0 magnesium chelatase i2 (.1) Lus10015302 [exp] 75 / 1e-16 AT5G45930 632 / 0.0 magnesium chelatase i2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G254308.1 pacid=42789921 polypeptide=Potri.001G254308.1.p locus=Potri.001G254308 ID=Potri.001G254308.1.v4.1 annot-version=v4.1 ATGCAAAATTCAATTCTTTTTGTATATGATGAAGCTGGAGATGAAATTAAGCAGCCTATGCTGGCAATTGAAAGTTTGGAACTGCCCTTTTGGTGGGAAG ATGGTTTGGCTGAACAAGTGGAATACAATTCCGATGGTAATATCAAGACCCAAGTTGTGAGATCTCCTTTTGTTCAGATTCCTGTGGGAGTTACCGAGGA TAGGCTCATTGGATCTGTTGACGTTGAGGAATCCATGAAAACAGGAACAACTGTCTTCCAACCTGGCCTTCTCGCTGAAGCTCATAGAGGTGTTTTATAT GTTGGCGAAATTAATCTCTTGGATGAGGGCATTAATAATTTACTTCTTAATGTGTTGACGGAAGGATCAGCTTTGAGCATCCTTGCAAGCCATTTCTGA
AA sequence Show only first row Show all	>Potri.001G254308.1 pacid=42789921 polypeptide=Potri.001G254308.1.p locus=Potri.001G254308 ID=Potri.001G254308.1.v4.1 annot-version=v4.1 MQNSILFVYDEAGDEIKQPMLAIESLELPFWWEDGLAEQVEYNSDGNIKTQVVRSPFVQIPVGVTEDRLIGSVDVEESMKTGTTVFQPGLLAEAHRGVLY VGEINLLDEGINNLLLNVLTEGSALSILASHF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Potri.001G254308 [exp]	0	1
AT1G16260			Wall-associated kinase family ...		Potri.009G157201 [exp]	4.47	0.9331
AT5G05800			unknown protein		Potri.001G238000 [exp]	12.40	0.9200
					Potri.007G117400 [exp]	12.96	0.8845
					Potri.013G148950 [exp]	14.42	0.9097
AT5G03990			unknown protein		Potri.006G262800 [exp]	30.39	0.9284
AT2G27770			Plant protein of unknown funct...		Potri.017G116200 [exp]	31.01	0.8858
					Potri.017G065250 [exp]	32.07	0.8631
AT2G17380		AP19	associated protein 19 (.1)		Potri.002G001800 [exp]	32.40	0.9156
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.004G104800 [exp]	34.05	0.8635
AT5G14890			NHL domain-containing protein ...		Potri.003G101300 [exp]	35.32	0.8913

Compare expression of checked genes

Potri.001G254308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.