Plant FIBer expression Database

Potri.001G254600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12410 416 / 4e-145 THUMP domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G049700
[exp]
643 / 0 AT5G12410 420 / 1e-146 THUMP domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005018
[exp]
454 / 5e-160 AT5G12410 415 / 9e-145 THUMP domain-containing protein (.1)
Lus10019037
[exp]
445 / 2e-156 AT5G12410 410 / 8e-143 THUMP domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02926 THUMP THUMP domain
Representative CDS sequence
>Potri.001G254600.1 pacid=42793503 polypeptide=Potri.001G254600.1.p locus=Potri.001G254600 ID=Potri.001G254600.1.v4.1 annot-version=v4.1
ATGGCAACTGAAAACAAGCCAAAGTCTAGTGCCAGTGTCACTACCAACAGCAAGAAGAGAAAGCAACGCTACCTCCCTCACAATAAGCCAGTGAAGAAGA
AGGGTTCCTACCCATTACACCCAGGAGTTCAAGGATTCTTTATCACTTGTGACGGGGGAAGGGAGCGCCAAGCCTCGCGTGAGGCTATTAACGTTATTGA
TTCTTTTTATGAAGAACTAGTTTTTGGGAAGGATACTAGTGTGAAGCTTGCAGAGTTGCCTAATAAACCTATAAATAAAAAGATTAAGTTCTCATATTCT
GATGTTGAAGGAGACGATGACGAAGAAAAGGAGGAGGATGAGGAAGATGGGTTAGATGAGAACAAATCAGGTGCCCCCGAAGCCAATGATGCAAAGAATG
AAAACCCAGCAGACGAAAAGTTAGGATCTCCTTGTCTAGAAAATGAGAGCAGTGAATGTCAAAGAAGAGAAAAGACTAATCAAGAAGAGGGTTGTAAAAA
TGATAAAAAACAAGAAAGTGAGGCAGAGGAGCTACCAGCAAAGAAGAAATGCACAGAAACATGTGCCCCCAAGTCTGTTGGCCAAGAAAAAGTGGAGGAG
AAATCCATTGATAAGCTTATTGAGGATGAACTCAAAGAACTTGGAGATAAGAACAAGAGACACTTTCTCAGCCTTGATTCTGGTTGTAATGGTGTTGTCT
TTGTTCAAATGCGCAAGATAGATGGGGACCCTTGTCCCAAAGATATTGTGCAACATATGATGACATCTGCTGCATCAACAAGGAAACACATGTCCAGGTT
CATTTTAAGAGTGTTACCAATTGAAGTTGCGTGCTATGCTTCAGAAGATGAAATTTCAAGAGCAATTGCACCAGTTGTGGAGAAATATTTTCCCGTGGAT
ACCCAGGACCCGCAGAAGTTTGCAGTAATGTATGAAGCCCGTGCAAACTCTGGTATTGACAGGATGAAAATTATAAATTCCGTTGCAAAATGTGTTCCTG
GACCTCATAAAGTTGATCTTAGCAATCCTGACAAGACAATTGTAGTTGAAATTGTCAAGACTCTGTGCTTGATCGGGGTTATTGAAAAGTACAAGGAGTT
GTCCAAGTACAACTTGAGGCAGCTCACATCTTCGAAGTAG
AA sequence
>Potri.001G254600.1 pacid=42793503 polypeptide=Potri.001G254600.1.p locus=Potri.001G254600 ID=Potri.001G254600.1.v4.1 annot-version=v4.1
MATENKPKSSASVTTNSKKRKQRYLPHNKPVKKKGSYPLHPGVQGFFITCDGGRERQASREAINVIDSFYEELVFGKDTSVKLAELPNKPINKKIKFSYS
DVEGDDDEEKEEDEEDGLDENKSGAPEANDAKNENPADEKLGSPCLENESSECQRREKTNQEEGCKNDKKQESEAEELPAKKKCTETCAPKSVGQEKVEE
KSIDKLIEDELKELGDKNKRHFLSLDSGCNGVVFVQMRKIDGDPCPKDIVQHMMTSAASTRKHMSRFILRVLPIEVACYASEDEISRAIAPVVEKYFPVD
TQDPQKFAVMYEARANSGIDRMKIINSVAKCVPGPHKVDLSNPDKTIVVEIVKTLCLIGVIEKYKELSKYNLRQLTSSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G12410 THUMP domain-containing protei... Potri.001G254600
[exp]
0 1
AT1G74310 HOT1, ATHSP101 heat shock protein 101 (.1) Potri.015G056900
[exp]
13.49 0.8820 Pt-ATHSP101.1
AT5G59720 HSP18.2 HSP18.1... heat shock protein 18.2 (.1) Potri.010G195700
[exp]
18.86 0.8814 Pt-HSP18.4
AT1G74310 HOT1, ATHSP101 heat shock protein 101 (.1) Potri.015G057000
[exp]
24.06 0.8775
AT2G46240 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASS... Potri.002G166300
[exp]
27.49 0.8753
AT4G02720 unknown protein Potri.005G210900
[exp]
29.49 0.8123
AT3G56860 UBA2A UBP1-associated protein 2A (.1... Potri.012G109100
[exp]
30.46 0.7565
AT3G12580 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN... Potri.001G042600
[exp]
31.30 0.8746 HSP70.9
AT3G12580 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN... Potri.001G042700
[exp]
34.46 0.8742 Pt-HSP70.10
AT5G02920 F-box/RNI-like superfamily pro... Potri.017G146500
[exp]
35.21 0.8705
Potri.013G018050
[exp]
39.49 0.8718

Potri.001G254600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.