Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50460 619 / 0 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 583 / 0 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT4G29130 488 / 1e-169 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 479 / 3e-166 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G47840 405 / 5e-137 HXK3 hexokinase 3 (.1) AT4G37840 275 / 2e-86 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050000 [exp] 777 / 0 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.018G088300 [exp] 506 / 1e-176 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G190400 [exp] 484 / 4e-168 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.005G238600 [exp] 440 / 7e-151 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.007G009300 [exp] 339 / 3e-111 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019038 [exp] 680 / 0 AT1G50460 636 / 0.0 hexokinase-like 1 (.1) Lus10005019 [exp] 679 / 0 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10038287 [exp] 484 / 4e-168 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10037588 [exp] 481 / 6e-167 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 467 / 5e-161 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10006843 [exp] 463 / 1e-159 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10024336 [exp] 437 / 1e-149 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10002041 [exp] 430 / 1e-146 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10025815 [exp] 421 / 7e-142 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10011584 [exp] 238 / 1e-72 AT4G37840 374 / 1e-125 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00349 [poplar] [flax] Hexokinase_1 Hexokinase CL0108 [poplar] [flax] Actin_ATPase PF03727 [poplar] [flax] Hexokinase_2 Hexokinase
Representative CDS sequence Show only first row Show all	>Potri.001G254800.1 pacid=42791551 polypeptide=Potri.001G254800.1.p locus=Potri.001G254800 ID=Potri.001G254800.1.v4.1 annot-version=v4.1 ATGGGGAAGGTGGCGGCGGGGGTGGCGGTTGGGGTGGCGGTGGCGGCGTGTGCGGTGGCAGGAGTGGTTGTGGGGAGGAGGGTAGGGAGTAGGAGGAAGT GGAAGAGAGTGGTGAGAGTGTTGGAAGAGCTAGAAGAAGCATGTGAGACCCCAGTTGGGAGGTTAAGGCAAGTAGTGGATGCTATGGCTGTGGAGATGCA TGCTGGTTTGGCTTCTGAAGGTGGCTCTAAGCTCAAAATGTTACTCACTTTTGTTGACCATTTGCCTACTGGGAGTGAGATAGGAACTTATTATGCTCTA GATCTTGGGGGTACTAATTTTAGGGTCTTGCGGATTCAGCTAGGAGGTAGAAGATCTTCAATCTTGTCTCAAGATGTGGAGCGACAACCCATTCCCCAGC ACTTGATGACAAGCACAAGTGAGGATCTCTTTGATTTTATTGCTTCAACCTTAAAGCAATTTGTTGAAAAAGAAGAAAGTGGTTCCGAGCCTTCTCCAGT TAGAACAAGGGAGCTTGGGTTTACATTTTCTTTTCCAGTGAAACAGTCATCACTTCGTTCAGGGATCCTCATCAAATGGACAAAAGGATTTGCAATTGAA GACATGGTTGGAAAAGAGGTGGTTGAACTTTTAGAAGCTGCATTGGTCAGGAGTGGTTTAGATATGCGAGTGGCATTGCTGGTAAATGATACTGTGGGAA CCTTAGCACTTGGACGTTATCATGATGCCGATACTGTTGCTGCTGTGATAATTGGAACAGGTACCAATGCCTGTTATTTAGAACGGGCAGATGCCATCAT AAAGTGTCAAGGTCTGCTTACAACTTCTGGATACATGGTTGTTAACATGGAATGGGGGAATTTCTGGTCATCTCATTTGCCAAGAACTTCTTATGATATT GATTTGGATTCCGAAAGCCCTAACCCAAATGATCAGGGTTTTGAGAAAATGATATCAGGAATGTATCTCGGTGACATTGTTCGAAGAGTTATTCTCAGAA TCTCGCTAGAGTCGGATATATTTGGACCTGTTTCCTCCAGATTATCAATCCCCTTTATTTTGCAAACTCCTTTATTGGCTGCAATGCATGAGGATGACTC TCCTGAGCTGAAGGAAGTTGCTAAGATATTGAAAGAAACTTTGGAGATTTCAGAGGTCTCTTTGAAAGTCCGAAAGCTTGTTGTAAGGATATGTGATGTC GTGACGTGTAGGGCTGCTCGATTGGCAGCTGCTGGCATTGTGGGAATCTTGAAGAAGATTGGACGTGATGGGAGCGGAGCCGGAGGCACTGGTGGAAGAA ACAGAAGTGATGTTAAAATGAAAAGAACAGTTGTGGCGATTGAAGGGGGTTTATATACAAGTTATACAATGTTCAGAAAGTACTTGCATGAAGCACTGAA TGAAATATTGGGAGATGTGGCCCAACATGTCATTCTCCAGGTTACAGAAGACGGATCAGGCATTGGCGGAGCTCTCCTTGCTGCCTCATATTCATCCTAC AGCGTGGATGGCGTAAAGCTGCTATAA
AA sequence Show only first row Show all	>Potri.001G254800.1 pacid=42791551 polypeptide=Potri.001G254800.1.p locus=Potri.001G254800 ID=Potri.001G254800.1.v4.1 annot-version=v4.1 MGKVAAGVAVGVAVAACAVAGVVVGRRVGSRRKWKRVVRVLEELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDHLPTGSEIGTYYAL DLGGTNFRVLRIQLGGRRSSILSQDVERQPIPQHLMTSTSEDLFDFIASTLKQFVEKEESGSEPSPVRTRELGFTFSFPVKQSSLRSGILIKWTKGFAIE DMVGKEVVELLEAALVRSGLDMRVALLVNDTVGTLALGRYHDADTVAAVIIGTGTNACYLERADAIIKCQGLLTTSGYMVVNMEWGNFWSSHLPRTSYDI DLDSESPNPNDQGFEKMISGMYLGDIVRRVILRISLESDIFGPVSSRLSIPFILQTPLLAAMHEDDSPELKEVAKILKETLEISEVSLKVRKLVVRICDV VTCRAARLAAAGIVGILKKIGRDGSGAGGTGGRNRSDVKMKRTVVAIEGGLYTSYTMFRKYLHEALNEILGDVAQHVILQVTEDGSGIGGALLAASYSSY SVDGVKLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Potri.001G254800 [exp]	0	1
AT2G24130			Leucine-rich receptor-like pro...		Potri.005G030626 [exp]	5.47	0.8775
					Potri.002G182100 [exp]	6.48	0.8977
AT3G23440		EDA6, MEE37	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G068800 [exp]	7.14	0.9145
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079800 [exp]	7.74	0.9046	ERF6
AT3G12630		SAP5	stress associated protein 5, A...		Potri.009G063900 [exp]	9.16	0.8768
AT4G00231		MEE50	maternal effect embryo arrest ...		Potri.008G158901 [exp]	10.95	0.8922
AT5G02220			unknown protein		Potri.010G201900 [exp]	12.72	0.8677
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.002G122600 [exp]	12.96	0.8640
AT3G56880			VQ motif-containing protein (....		Potri.006G032300 [exp]	14.73	0.8550
AT3G26840			Esterase/lipase/thioesterase f...		Potri.017G062200 [exp]	15.74	0.8067

Compare expression of checked genes

Potri.001G254800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.