Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12430 738 / 0 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 554 / 4e-177 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT1G02650 100 / 1e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 99 / 7e-21 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G58620 99 / 7e-21 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT5G65160 98 / 2e-20 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT4G02100 97 / 2e-20 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT3G62570 92 / 6e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78120 88 / 1e-17 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G53300 87 / 6e-17 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050200 [exp] 1951 / 0 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.016G043900 [exp] 660 / 0 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.006G047700 [exp] 640 / 0 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.007G091200 [exp] 105 / 5e-23 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G076800 [exp] 104 / 1e-22 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 99 / 5e-21 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G166300 [exp] 93 / 7e-19 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G111500 [exp] 91 / 3e-18 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.014G122300 [exp] 89 / 9e-18 AT4G02100 637 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019041 [exp] 1019 / 0 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10005022 [exp] 1004 / 0 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10035427 [exp] 548 / 5e-176 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10031042 [exp] 469 / 6e-145 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10031041 [exp] 126 / 2e-33 AT2G41520 128 / 5e-35 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10028154 [exp] 105 / 1e-22 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 102 / 7e-22 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10022500 [exp] 97 / 4e-20 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10016804 [exp] 96 / 1e-19 AT5G65160 635 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10002438 [exp] 86 / 1e-16 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.001G255000.3 pacid=42792397 polypeptide=Potri.001G255000.3.p locus=Potri.001G255000 ID=Potri.001G255000.3.v4.1 annot-version=v4.1 ATGAACCCATCAAATTTTGATAATTTAAATTCTGGGTTCTCAAATTCAACCCGAATTAGTAACCAAAATCCAAACTTTAGCTCTCGATCATCATCGTCCT CGTCAACTAAAGGTGGTCTTTCGAGGCCAAGATTGGCAAAAGTTAGGAGGCAATCGAATCCCCAGAATTTTAAATCCAATGAAGAAACCTGGGTTGGGCT CGGTTTCAATCAGTTCCGACCCGATAGGAGTCGGGTTGAACCGGGTGGTTCTGGGAGTGGTGGTACTGAGGCGTTTGTGTTTGGAGCTAGTCCAAGTAAT ATGGGGTTTAACTCGAATTCCGGCAAGGGAATTATAGAGGAATTGAAAAGTTTGAGAACTGGAAGTGAAACTAATGTAGATGTGAGCGAGAAGAGTGGTT TTGTTTTTGCAAGTGATGGTAATAAGAGTCATGGTGTTGACGAGATCATGCAGAAGTTGAGCATTGATGATAAGGAGAAGGTTGTAGATGGGGCGTCTAA GTTAAGTGCTAATGGCAAGTTTGGGAGCGGTGACAATGTAGGTAGTTCTATTGGGAGAAATGTGGAGTCACTGCCACCAGATGAGTTGGAGAAGAAATTG AATATTGAAGAGGCTGGAGATGCCACTAATGGTGGTGGTAGTTTTCAAGCTGATGATATCAAAAAGTTTGGATTTAAAAGTAGTGAAAAGGGTAGTGAAA TGTTTGCCGCTGCTGCAAAGAATGCCCTTCCTGATCAAATCAAGAATTTGAACATAAAGGACTATGTAGTCACTAACAATGTTAATAATGAGACCAATGA GAAGGATAGTTTTGCCTTTGGAAGCAGGGAAAGCATTGGTGGTTATGTTGGTGGAGAGAGCGAGAGTGCACTTTCACACGAGATGGGGTGCAAGTTGAAA ATTGGAAGTGCGAAGGTAGAATCTTCAGGTCAAACCAACATGGGATTTTCTTCTTGTCGAATCTCCAGAAAGGATATGCCAACTGTAAATAAGGGTGATA AGAAATTCCACGATTGTGGTGATCCCACTGAATTTATTTTTGAAGGAGGAACGCCGGGTAAAGATTTAAGTGGTATTCATGCATCTATGGATCAGCCAAA AGTTGATACACAACCAATTGGAGTTGCGGGACCATCTCATGTCTTCTCATCCAGTAGATTGGCTGGTTGGAATGCTTTCAGGGTGCCACCTACTGGTGGA CTTGAGAAGACAGATGGGTTTAGTTTTACAAGCAAGCAAGATGGCGCTGGGTCGCCATTTGTAGAATTTAAAACGCCAAATCCTAAAGGAAATCTTTTCA CTGGCTTAGATCCGAAGATGGAATTCAGTACAAAGTTTAAAGATTCAAAAGTAAAGAAGAAAAGGGGAAAGTTGAAGCAACCTGTCAAAGTCCCTCTGTC GCCAGGTCTAGATTTTGTTACCAGGGAAAGTGGTTCCCAAGAAATTCCAGAGGCTTCCGAATCATATTCACCAATGGATATTTCACCATATCAGGAAACA TTGTCTGATGCTAGAAATTCCAGGGAAACTTCTGTCACATCAGAGGAGTCTTTCGCACTAGATAGTCAACATGCATCAACTGATTCACAACCAACTGTTC TGAATGATGCAATAGATGAAGATCTGGTTGTTGCAGCACACAGAATGGATATAAATGAAGAGGATATGAAATGTAGAGAAACTAAAGAGGAAAATTCTGA AAACTGTTTTGATAAAGGTATCGGAGCTGAAAATCATATGGAGGATTCTGTTTCAGGGGCTGAAACTGAAAGCTTGAAATCTGCAAACGAGGAAATAGAT TCTATCAATGATGTTATAGTTACGTCAGCAGAAAGTGAAGCCAGTTCAAGTACAAATCTAGATAGTGACCTCAGCACTCAATTCTTTTCAGCTGTGAGTT CAGAAGATACTGTCAATTCAGGCTTCACCTTTGCTGCCTCTTCTACTGCACAAGTATCACCTAAGCATCATCATAAAAAGAACAATCTCGTTAGAGCTGA TAATGATTCCTTTAATTCCAGTGCTACTTCCAAAGGTTCATATGCATCATCTTCTTTGCAATTTACACCATTTTCTGGATCTTCTTCACCCTTGTCCCCT GTACGGAGCAAGAAAGCTGGCCTATCTGCTCCTTCACACGTGGTTGGTGATAATGGTGAGCTGCTTAAAGGACTGGAGATCAATCAAGGGTCTGTTTCTG CATCTGTTGCAGCTCAAGAAGCATGTGAGAAGTGGCGACTGAGGGGAAACCAAGCATATAAAAATGGGGATTTGTCTAAAGCTGAGGATTGTTACACACA AGGTGTAAATTGTGTTTCTAAAAGCGAGACATCTGTAAGCTTTCTCAGGGCATTGATGTTGTGCTATAGCAACCGTGCGGCTACCCGTATGTCTCTTGGA AGAATGAGAGATGCACTAGGAGACTGTAAGATGGCTGCTGCAATTGATCCCAATTTTATCAGGGTGCAAGTCAGAGCTGCAAATTGTTACCTTGCTCTGG GGGACGTTGAAGGTGCAGTGCAATATTTCAAAAAGTGCTTGCAGTTCGGCATTGATGCCTGTGTAGACCGAAAAATTTCTGTAGAAGCCTCTGATGGGTT GCAAAAGGCACAGAAAGTGTCTGAGTGCATGCAACATTCTGCTGAACTTCTGAAACGGGGAGCACCTAATGATGCAGAGAGTGCTTTACATGTAATTGCT GAGGGTTTGTTGATAAGTTCATGCTCTGAAAAATTACTTGAAATGAAAGCAGAGTCTCTTTTCATGCAGCTGCGGAAGTATGAAGATGTAATTCAACTGT GTGAGCATACATTTGACTCTGCCAAGAAGAATTCTCCTCCATTACATGCTGATTACCATGTAGAAAATATTGGTCCTGAACTCACAAAGGACACATCATT TATGATCTGGCGTTGCTGCCTCATTTTCAAATCTTACTTCCACCTTGGAAGGCTGGAGGAGGCTATTGGTTCACTAGAGAAGCAAGTGGAACCTCCTTCT ACTGCAACAAGGATTGGTATTGAAACTCAAGAATCACTAGTGCTCTTAGCTGCCACTGTACACGAACTCATACGCCATAAGGCTGCAGGGAATGAAGCAT TTCAAGCAGGAAAGCATTCAGAAGCTATAGAACATTACAGTGCTGCTCTGTCACGTAAAATAGAATCACGGCCTTTTGCAGCCATTTGTTTTTGCAATAG AGCTGCTGCATACAAAGCACTGGGCCAAATCACTGATGCTACAGCAGACTGCAGCCTAGCAATAGCTCTTGATGGAAACTATTTGAAGGCAATTTCTAGA CGAGCCACTTTATATGAGATGATTAGGGATTATGGACAAGCGGCTAGAGATCTTCAGAAGCTGGTAGCTGTTCTCACTAAGCAAGTAGAGGAGAAAACTA AACAGTTTGGGCACTCTGATAGAACAACAAACTTGGCCAATGATCTTAGACAAGCTCGTTTACGTCTTTCTACCATAGAAGAAGCAGCCAGAAAGGAGGT TCCTCTGAATATGTACCTCATTCTGGGAATTGAACCTTCCGCTTCAGCATCAGAAGTTAAGAAGGCATATCGCAAAGCTGCACTTAGACACCATCCTGAC AAGGCTGGTCACTCCTTGGCAAGAAGTGATAATGGAGATGATAGCCTGTGGAAGGAGATAGGAGAAGAAGTCCACAAGGACACTGACAGACTTTTTAAAA TGATTGGGGAGGCATATGCCATGCTTTCAGACCCTGCTAAGCGTGCACAGTATGATCTTGAAGTGATGAGGAATGATCTGAAGAAACAAAGTGGAAGCAG TACATACAGAACACATACAGATGCTCCGAATTATCCATTTGAAAGAAGCAGCAGTAGGAGACAATGGAAGGAGGGTTGGAGGCCCTATGGCAGGTACTGA
AA sequence Show only first row Show all	>Potri.001G255000.3 pacid=42792397 polypeptide=Potri.001G255000.3.p locus=Potri.001G255000 ID=Potri.001G255000.3.v4.1 annot-version=v4.1 MNPSNFDNLNSGFSNSTRISNQNPNFSSRSSSSSSTKGGLSRPRLAKVRRQSNPQNFKSNEETWVGLGFNQFRPDRSRVEPGGSGSGGTEAFVFGASPSN MGFNSNSGKGIIEELKSLRTGSETNVDVSEKSGFVFASDGNKSHGVDEIMQKLSIDDKEKVVDGASKLSANGKFGSGDNVGSSIGRNVESLPPDELEKKL NIEEAGDATNGGGSFQADDIKKFGFKSSEKGSEMFAAAAKNALPDQIKNLNIKDYVVTNNVNNETNEKDSFAFGSRESIGGYVGGESESALSHEMGCKLK IGSAKVESSGQTNMGFSSCRISRKDMPTVNKGDKKFHDCGDPTEFIFEGGTPGKDLSGIHASMDQPKVDTQPIGVAGPSHVFSSSRLAGWNAFRVPPTGG LEKTDGFSFTSKQDGAGSPFVEFKTPNPKGNLFTGLDPKMEFSTKFKDSKVKKKRGKLKQPVKVPLSPGLDFVTRESGSQEIPEASESYSPMDISPYQET LSDARNSRETSVTSEESFALDSQHASTDSQPTVLNDAIDEDLVVAAHRMDINEEDMKCRETKEENSENCFDKGIGAENHMEDSVSGAETESLKSANEEID SINDVIVTSAESEASSSTNLDSDLSTQFFSAVSSEDTVNSGFTFAASSTAQVSPKHHHKKNNLVRADNDSFNSSATSKGSYASSSLQFTPFSGSSSPLSP VRSKKAGLSAPSHVVGDNGELLKGLEINQGSVSASVAAQEACEKWRLRGNQAYKNGDLSKAEDCYTQGVNCVSKSETSVSFLRALMLCYSNRAATRMSLG RMRDALGDCKMAAAIDPNFIRVQVRAANCYLALGDVEGAVQYFKKCLQFGIDACVDRKISVEASDGLQKAQKVSECMQHSAELLKRGAPNDAESALHVIA EGLLISSCSEKLLEMKAESLFMQLRKYEDVIQLCEHTFDSAKKNSPPLHADYHVENIGPELTKDTSFMIWRCCLIFKSYFHLGRLEEAIGSLEKQVEPPS TATRIGIETQESLVLLAATVHELIRHKAAGNEAFQAGKHSEAIEHYSAALSRKIESRPFAAICFCNRAAAYKALGQITDATADCSLAIALDGNYLKAISR RATLYEMIRDYGQAARDLQKLVAVLTKQVEEKTKQFGHSDRTTNLANDLRQARLRLSTIEEAARKEVPLNMYLILGIEPSASASEVKKAYRKAALRHHPD KAGHSLARSDNGDDSLWKEIGEEVHKDTDRLFKMIGEAYAMLSDPAKRAQYDLEVMRNDLKKQSGSSTYRTHTDAPNYPFERSSSRRQWKEGWRPYGRY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.001G255000 [exp]	0	1
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.001G212700 [exp]	2.00	0.8180
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	4.24	0.8238
AT3G01380			transferases;sulfuric ester hy...		Potri.001G350700 [exp]	5.00	0.8169
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	9.38	0.8390
AT5G58510			unknown protein		Potri.009G076000 [exp]	10.39	0.7957
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.018G142400 [exp]	12.00	0.7872
AT1G31730			Adaptin family protein (.1)		Potri.004G235200 [exp]	14.24	0.7753
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.002G019400 [exp]	14.49	0.8215
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	26.72	0.8022
AT5G18420			unknown protein		Potri.004G092400 [exp]	30.19	0.7789

Compare expression of checked genes

Potri.001G255000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.