Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GNS1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16260 369 / 1e-127 Glycosyl hydrolase superfamily protein (.1) AT3G57240 325 / 2e-110 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57270 320 / 2e-108 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57260 295 / 1e-98 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT5G20340 236 / 2e-75 BG5 beta-1,3-glucanase 5 (.1) AT5G20390 233 / 3e-74 Glycosyl hydrolase superfamily protein (.1) AT5G20330 231 / 1e-73 BETAG4 "beta-1,3-glucanase 4", beta-1,3-glucanase 4 (.1) AT1G77790 223 / 2e-70 Glycosyl hydrolase superfamily protein (.1) AT1G33220 213 / 8e-67 Glycosyl hydrolase superfamily protein (.1) AT1G77780 211 / 1e-65 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050300 [exp] 482 / 8e-173 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 356 / 2e-122 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 342 / 3e-117 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.006G046100 [exp] 322 / 4e-109 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 321 / 6e-109 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 315 / 1e-106 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 314 / 4e-106 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.009G050401 [exp] 300 / 2e-101 AT4G16260 263 / 2e-87 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 260 / 9e-85 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016883 [exp] 310 / 1e-104 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10002807 [exp] 301 / 4e-101 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10019801 [exp] 300 / 8e-101 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10010091 [exp] 311 / 1e-100 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10014109 [exp] 298 / 9e-100 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031037 [exp] 288 / 6e-96 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10014110 [exp] 287 / 6e-96 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027860 [exp] 285 / 2e-94 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10014108 [exp] 289 / 2e-93 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10039233 [exp] 241 / 2e-77 AT4G16260 258 / 5e-84 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.001G255100.1 pacid=42787761 polypeptide=Potri.001G255100.1.p locus=Potri.001G255100 ID=Potri.001G255100.1.v4.1 annot-version=v4.1 ATGAACACATTCATGGCTACGACTATCTTGCTGCTTTTTGGTTTGATGATTTCTCGCCTAACACTTTCAGATGCACAATCCATCGGGGTTTGTTATGGAA AGAATGGAAACAATTTGCCATCTGATCAGGAAGTTGTGAGTCTTTTCCAAACAAATGTTATTGGAAGGATGCGAATTTATGATCCGAACAGAGACACACT TGAAGCCCTTAGAGGATCAAACATAGAAGTCGTCCTTGGTGTCCCCAACGACAAACTTCAGTCCCTTACTGATGCCTCAGCTGCAACAACCTGGGTTCAA GACAACGTTGTGGCCTACTCATCCAATGTCAAGTTCCGCTACATTGCTGTTGGCAATGAAGTACACCCTGGAGATGCGAATGCACAATCCGTTCTACCGG CAATGCAGAACATACATAACGCAATAGCATCCGCCAATTTACAAGATCAAATTAAGGTTTCAACAGCGATAGACACAACTTTGTTGGGCAGCTCCTACCC TCCGTCGGATGGGTCCTTTAGTGACAGTGCAAGTTCATACATAAACCCTATCATCAACTTCTTAAGGACCAACGGCTCACCACTTCTTGCAAATGTGTAT CCCTACTTCAGCTACACTGGCAACCCACAAAGCATTGATCTTAGCTATGCCTTGTTTACTTCACCAGGTGTCGTTGTGCAAGATGGTCAATATGGATACC AGAATTTGTTTGATGCATTGTTAGATTCTCTTTATGCTGCTCTCGAGAAAGCAGGTGCCCCAGATTTGAACATTGTTGTATCGGAAAGTGGTTGGCCATC TGAAGGTGGGACTGCAGCAACGGCTGACAACGCAGGAACTTTCTACAGGAATTTGATTAATCATGTGAAACAAGGGACTCCCAGAAGATCTGGACAGGCT ATAGAGACATACTTGTTTGCAATGTTTGATGAGAATCTGAAGGCAGCAGGAATTGAACAACATTTTGGTCTCTTCCTCCCCAACAAACAGCCTAAGTACC AACTTACTTTTGGTTAA
AA sequence Show only first row Show all	>Potri.001G255100.1 pacid=42787761 polypeptide=Potri.001G255100.1.p locus=Potri.001G255100 ID=Potri.001G255100.1.v4.1 annot-version=v4.1 MNTFMATTILLLFGLMISRLTLSDAQSIGVCYGKNGNNLPSDQEVVSLFQTNVIGRMRIYDPNRDTLEALRGSNIEVVLGVPNDKLQSLTDASAATTWVQ DNVVAYSSNVKFRYIAVGNEVHPGDANAQSVLPAMQNIHNAIASANLQDQIKVSTAIDTTLLGSSYPPSDGSFSDSASSYINPIINFLRTNGSPLLANVY PYFSYTGNPQSIDLSYALFTSPGVVVQDGQYGYQNLFDALLDSLYAALEKAGAPDLNIVVSESGWPSEGGTAATADNAGTFYRNLINHVKQGTPRRSGQA IETYLFAMFDENLKAAGIEQHFGLFLPNKQPKYQLTFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16260			Glycosyl hydrolase superfamily...		Potri.001G255100 [exp]	0	1	Pt-GNS1.4
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095300 [exp]	1.00	0.9980
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.011G031800 [exp]	1.41	0.9977
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041900 [exp]	12.60	0.9964
AT1G52565			unknown protein		Potri.001G192800 [exp]	13.85	0.9919
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.005G205100 [exp]	14.59	0.9636
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107950 [exp]	15.68	0.9840
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.003G213700 [exp]	15.87	0.9961
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.006G055600 [exp]	18.30	0.9958	Pt-ZOG1.15
AT5G24090		ATCHIA	chitinase A (.1)		Potri.012G033866 [exp]	18.60	0.9726
AT2G15220			Plant basic secretory protein ...		Potri.009G094600 [exp]	21.81	0.9956

Compare expression of checked genes

Potri.001G255100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.