Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21100 338 / 1e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G12440 325 / 5e-102 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT3G51950 226 / 7e-66 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G63450 195 / 1e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G51520 175 / 2e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G05160 133 / 8e-33 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G51530 86 / 1e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52980 105 / 6e-07 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050600 [exp] 911 / 0 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G050700 [exp] 385 / 2e-124 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255532 [exp] 368 / 3e-118 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.003G204300 [exp] 301 / 4e-92 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 286 / 4e-86 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G276300 [exp] 224 / 6e-69 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) Potri.002G221100 [exp] 147 / 2e-37 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.014G165500 [exp] 145 / 1e-36 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005023 [exp] 405 / 1e-133 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 396 / 1e-129 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 375 / 3e-122 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027350 [exp] 301 / 3e-94 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019044 [exp] 290 / 8e-89 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 257 / 1e-76 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10039575 [exp] 255 / 2e-76 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 211 / 4e-63 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 188 / 3e-53 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10006379 [exp] 151 / 5e-39 AT2G05160 467 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G255400.1 pacid=42788328 polypeptide=Potri.001G255400.1.p locus=Potri.001G255400 ID=Potri.001G255400.1.v4.1 annot-version=v4.1 ATGGATACTCATGAGATAACTAACATACTGTTAACGAAACTCAAGAGTTTAGATCCAGAAAACGCCTCTAGAATTATGGGTTTTATTCTCATACAAGACC CTACTGAAAAAGATTTGTTACGGTTAGCGTTTGGCCCTGAAACCCTCTTGCAAAATGTAGTCTTCAAGGCAAAAATCCACTTAGGACTCTCTACTAACAC GTTATCTACACCTTCTACACCCTCTTCTCCGTCACCACTCAATCCCATAGCAAGGCCTTGTAATAACACCAACCCCTTTCCACAATCTTCTCCTAGAATC ACAAATAATGGTTCTTTTCTTGACTTTTCAAAAAACCCGTCTCCAAATCCTTGGTCCGTTCACGGGCTGCCAAATAATAGTGACAGTAAGAGTTCAATTA GCCCAAAGAGCAGTCCTTTTTTGTCCTATGATAATATACGTTCTGGGTCTGTTTTGGTGCCGCCATTCTCGAGAAATGGTGGTAATGGCGGTGGTGTTTG CAGCAATAATAGTGCCGATTTCCTTGGCGAGTATCAGTCAGATGATCATCTGTCGTTCTTCGATGACCCCTCTTCAAAAAACGAGGACTTTATGGACCAA AGGGTTCAGATGGGTGGTTATTCAGTTGCTAATGGAGATGTCCATTTGCATAGAAGAAGGTTTTCAGAGAGTGATGCGTGTTCTGGTGCTGAGGATGGGG GTTTTGGTCTCCGGTATAGGCAGTGCCTGTATTTTGCTAGAGGGTTTTGCAAAAATGGAGAAAGTTGCAAGTTTGGTCATGGTGATGAAAATATGGCTGA GGTTAATGTTGGTGGTGCTCTTGTGAGTTCACCAAGGGAAATGGAGGAACTTTATTTGCAGCAGCAAGAGGAGATGATGAAAAGGAAGGCTGTACAGCAG CAGCAAGAGGAGATGATGAAAATGAAGGCTGTACAGCAGCAGCAGCAGCAAAGGTTGGCTTATAACAAGCACATGAATTTTCTGTTGCTGCAACAAAATG AAGCCGAGAGATTTGGCGCAGCAATGATGGGTGATGAATTTTACAAGTTTGGCCGGACCCGTGGTGGAAGGAATGACTTTTTGGCAATGGGAATGGCTGA AAAGGCAAATTCAGCATCTAGACAGATATACTTGACATTCCCAGCTGACAGCTCTTTCAAAGATGAAGATGTTTCAAATTATTTCAGTTCTTTTGGACCA GTTCAAGATGTCAGGATTCCATACCAGCAGAAGCGAATGTTTGGATTTGTTACATTTGTCTACCCAGAGACTGTGAAGGAAATATTGGCAAAGGGAAACC CTCATTATATTTGTGAGTCGCGTGTGCTTGTCAAGCCATACAAGGAGAAAGGAAAAGTTGCAAACAGGACGCAACAGTTACTGGAGAGGGGGGGTTTTTC ACCTGCTTCAAGCCCTTCAGGGTTTGATCCTAGAGAGCTATGTGATCTTCACCTTGGAGCAAGAATGCTTTATAATACTCCAGAAATGATGCTGAGAAGG AAATTGGAGGAGCAGGCAGAGTTGCAGCAAGCTATTGAACTCCAGGGGAGAAGGTTAATTAATCTGCAACTTCCAGACTTGAGGGGAGATCATGCACATC ATCACCAGCATAGTCTCTCTGTTGGTGCTCCCATTTCTCTGCCCACTCATCATACTCCCATCAATCAAACTGATATTCTAACCTCTGATGGCAAGAATGA GATAACATTAGAAGACAATGGGAATTGCTCAGGGGCCTCTAAATCCACCCTTGTTCCTGTTGCTGCAGAGAATCTTCAGGATGAAGTGAATGCAGCTTGC ATTCAGAACAATGACACTGTTAATTGCAAGGTGGAGAGCTTCACTGAAAGCCATGGAAGCAATTTCGAACGTGATAGCCTCACAAAATCTTCTGAGAATC AGCATCCGGACATGTCCCCATCTCGGGCCGAAGTTGAAGAAAGCAATGAGTTATCTGTCTCTTCGTGTTCTGAAAACGACGCATCAGTACCCACCACATC TACCAGCAACGAGGCTTCTAATTGA
AA sequence Show only first row Show all	>Potri.001G255400.1 pacid=42788328 polypeptide=Potri.001G255400.1.p locus=Potri.001G255400 ID=Potri.001G255400.1.v4.1 annot-version=v4.1 MDTHEITNILLTKLKSLDPENASRIMGFILIQDPTEKDLLRLAFGPETLLQNVVFKAKIHLGLSTNTLSTPSTPSSPSPLNPIARPCNNTNPFPQSSPRI TNNGSFLDFSKNPSPNPWSVHGLPNNSDSKSSISPKSSPFLSYDNIRSGSVLVPPFSRNGGNGGGVCSNNSADFLGEYQSDDHLSFFDDPSSKNEDFMDQ RVQMGGYSVANGDVHLHRRRFSESDACSGAEDGGFGLRYRQCLYFARGFCKNGESCKFGHGDENMAEVNVGGALVSSPREMEELYLQQQEEMMKRKAVQQ QQEEMMKMKAVQQQQQQRLAYNKHMNFLLLQQNEAERFGAAMMGDEFYKFGRTRGGRNDFLAMGMAEKANSASRQIYLTFPADSSFKDEDVSNYFSSFGP VQDVRIPYQQKRMFGFVTFVYPETVKEILAKGNPHYICESRVLVKPYKEKGKVANRTQQLLERGGFSPASSPSGFDPRELCDLHLGARMLYNTPEMMLRR KLEEQAELQQAIELQGRRLINLQLPDLRGDHAHHHQHSLSVGAPISLPTHHTPINQTDILTSDGKNEITLEDNGNCSGASKSTLVPVAAENLQDEVNAAC IQNNDTVNCKVESFTESHGSNFERDSLTKSSENQHPDMSPSRAEVEESNELSVSSCSENDASVPTTSTSNEASN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.001G255400 [exp]	0	1
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.019G033000 [exp]	2.44	0.8401
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	3.00	0.8153
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	3.16	0.8574
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	6.63	0.8395
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.006G046900 [exp]	7.34	0.8396
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Potri.016G014801 [exp]	8.83	0.7687
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	9.38	0.8126
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.001G188500 [exp]	10.58	0.8159
AT4G39790			Protein of unknown function (D...		Potri.007G090300 [exp]	12.84	0.8059
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Potri.012G034000 [exp]	12.96	0.8069

Compare expression of checked genes

Potri.001G255400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.