Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51950 346 / 3e-111 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G21100 317 / 3e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G12440 287 / 2e-87 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT1G51520 229 / 2e-68 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G63450 198 / 7e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G05160 142 / 7e-36 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G51530 73 / 1e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G14300 44 / 0.0003 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 43 / 0.0007 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52980 0 / 1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050700 [exp] 899 / 0 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.003G204300 [exp] 506 / 4e-171 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 489 / 3e-164 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050600 [exp] 413 / 1e-135 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255400 [exp] 407 / 3e-133 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G165500 [exp] 151 / 1e-38 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.002G221100 [exp] 146 / 4e-37 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G276300 [exp] 92 / 6e-21 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) Potri.003G040900 [exp] 43 / 0.0007 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019044 [exp] 358 / 1e-114 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10039575 [exp] 347 / 3e-111 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 342 / 4e-109 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014915 [exp] 307 / 4e-96 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 291 / 2e-89 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005023 [exp] 286 / 4e-88 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027350 [exp] 255 / 1e-76 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027351 [exp] 236 / 1e-72 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 216 / 7e-64 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10012333 [exp] 167 / 3e-44 AT2G05160 488 / 2e-168 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G255532.2 pacid=42790989 polypeptide=Potri.001G255532.2.p locus=Potri.001G255532 ID=Potri.001G255532.2.v4.1 annot-version=v4.1 ATGGATTCTTATGAAGCTGCTAACATGGTGTTTTCAAGGATCCAAAACTTGGAACCTGAAAATGCCTCAAAAATCATGGGTTATCTTCTCTTGCAAGACT ATGGAGAGAAAGAGATGATACGTTTTGCCTTTGGACCAGAGACTCTTCTGCACAATCTCATTCTCTATGCCAAAACCCAACTGGGATTTCTCTCAAACAA AACCTCTTCTTCACCTTTTATTCCTTCCTCTAGACCCAGTCCCTTGTCCATCCCCTCTTCAAGAATCACAAACAACAATGGCTTTGACATCACAAACCCC TCTTCTCCCTCTACAAACTCTTGGCATTTTTCGACTCCCAACTCCACCTCTCCACTCTCTTATGCCAGCGTTGTTAATGGAGCCAGTAGTATTAATGCTA GTTCAACACCTTTTCAGCCCACCGTCTCGTTATCTAATGCGTTTCCTTACAGCAATAACAATAGTAGTGCCAGTGATCTCGTTGATGAATATGAACTCCA GGATTGCTTTTCCTTTCTCAATGATTCAAAGACAGATGGTTTATTTGATCAAAGGGCAGAGTTAGCCACGAGTCCAACTGAATATGGTGATAACGGCTCG CACAAGCGAAGTTTTTCAGTACCAGACACGTGTGTTGGTTCGGAAGATTCAAACTCCAGGTTTGGTTGGAAGCCTTGCTTATATTTTTCGAGAGGGTTTT GCAAAAATGGTTCAGGTTGCAGGTTTGTTCATGGAGATTCGGCTGATACTGCTGCCATTGTTGGTTCACCAGGTGAACTCTACGAGTTTGAACAGTGTCT ACAAATACTCAGGTCAAAGGCTGCTGCCCAGCAAAAGAATCTAGCAGCAGCCTCCCAGTTCATGGCTGGAGCTAATTTTTTATCTCACAATAAAAGCTTG GACTTCCTTCATCAGCAACAAAATGACAGCCAAAGATCAGCTGCGGTAGCTGCATTGATGATGGGGGATGAGCTTCACAAGTCTGGAAGAATCCGGCCTG GAAGGAATGATTTTTCGCAAATTGGACTGGGAGGGGCAACGAGCCCAAGTTCAAGACAGATCTATTTGACATTCCCAGCTGATAGTACGTTCAGAGAAGA AGACGTTTCAAATTATTTTAGCATTTACGGGCCTGTGCAAGATGTGAGGATCCCATACCAGCAGAAGAGAATGTTTGGATTTGTTACTTTTGTGTTTGCA GAGACAGTGAGGCTTATTTTGGCAAAAGGGAACCCGCATTTTGTATGTGATTCCCGTGTGCTTGTTAAGCCTTACAAGGAGAAGGGAAAAGTCCCAGACA AGAAGCATCATCAACAGCAACAGATTCAGAGGGAAGAGTATTCAGCTTGTCCGAGCCCATCCAGGATCAATTCTAGAGAGGCATTTGATCTCCATATTGG AGCTAGAATGTTATACAATACTCAAGAGATGCTGAGCAGGAAATTAAAGGAAGAGGCTGATTTCCAGCAAGCTATTGAATCCCAAGGGAGAAGGCTATTG AATCTGCAACTTCTAGACTTGAAAAATAACAATCATCAACATCAACATCAACATCGATCCCTTCATGGTTTGTTAACTGGGTCTCCGCCTACACCAACTA TCCTGCACAGTCCCAACAATCAAACTCCCTTTTTTCCTGTTGATGACATTGATCAAGATGTTCCTCGAGGTAATGGTGGCAACCCTGATGCCGCAGTTGC TCAAAATGCTGTTTCAGATGTTGACAAGGAAGGGAGTCCAGCTTGCGATCACAATGATGGCAATAGCAATCATAGAGATAAAGAGGAGAAGTCCAACAAT GAAGAAAGCTATCTCCATGAAAATTTGGAGCATATTCTCCCAGACAATCTCTTTGCTTCTCCTAAGAAATCAGCTGGTGACCCCCTCACTGTCTTCTCCG CAGCTTCCGTGGAGGCTGATGAAAATACCACAAGCACTACATCATCTTCTCTCAACATGACCTCTCTTAAATCATGTTCTCTCCAAAAGCCCAGGTTGTC TTCCGGGCCTGGAACCGTTGGCATATAG
AA sequence Show only first row Show all	>Potri.001G255532.2 pacid=42790989 polypeptide=Potri.001G255532.2.p locus=Potri.001G255532 ID=Potri.001G255532.2.v4.1 annot-version=v4.1 MDSYEAANMVFSRIQNLEPENASKIMGYLLLQDYGEKEMIRFAFGPETLLHNLILYAKTQLGFLSNKTSSSPFIPSSRPSPLSIPSSRITNNNGFDITNP SSPSTNSWHFSTPNSTSPLSYASVVNGASSINASSTPFQPTVSLSNAFPYSNNNSSASDLVDEYELQDCFSFLNDSKTDGLFDQRAELATSPTEYGDNGS HKRSFSVPDTCVGSEDSNSRFGWKPCLYFSRGFCKNGSGCRFVHGDSADTAAIVGSPGELYEFEQCLQILRSKAAAQQKNLAAASQFMAGANFLSHNKSL DFLHQQQNDSQRSAAVAALMMGDELHKSGRIRPGRNDFSQIGLGGATSPSSRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVFA ETVRLILAKGNPHFVCDSRVLVKPYKEKGKVPDKKHHQQQQIQREEYSACPSPSRINSREAFDLHIGARMLYNTQEMLSRKLKEEADFQQAIESQGRRLL NLQLLDLKNNNHQHQHQHRSLHGLLTGSPPTPTILHSPNNQTPFFPVDDIDQDVPRGNGGNPDAAVAQNAVSDVDKEGSPACDHNDGNSNHRDKEEKSNN EESYLHENLEHILPDNLFASPKKSAGDPLTVFSAASVEADENTTSTTSSSLNMTSLKSCSLQKPRLSSGPGTVGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G255532 [exp]	0	1
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.005G130700 [exp]	1.41	0.7618
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Potri.016G110500 [exp]	2.82	0.7597	Pt-CAC3.2
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	5.83	0.7722
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Potri.013G077200 [exp]	11.22	0.7553
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.005G222700 [exp]	15.49	0.7263
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.010G082600 [exp]	20.44	0.7092
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Potri.007G011600 [exp]	21.21	0.7512
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Potri.005G190500 [exp]	21.42	0.7369
AT1G19880			Regulator of chromosome conden...		Potri.002G026600 [exp]	22.27	0.7522
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.001G135975 [exp]	24.49	0.7490

Compare expression of checked genes

Potri.001G255532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.