Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051100 [exp] 1655 / 0 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009962 [exp] 1196 / 0 ND / Lus10003631 [exp] 1058 / 0 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G255700.2 pacid=42792258 polypeptide=Potri.001G255700.2.p locus=Potri.001G255700 ID=Potri.001G255700.2.v4.1 annot-version=v4.1 ATGTATCGGAACCTTTTTATCACCAGATTCTGTCATGCCACTATGCCTTGTTTTCATTTAATATTTTTCATCTTGGTCCTCTTGTCATTGAGCCTTGGTT CTGCTTCTTGGTGCCCACATAACTATGCTCAACAAAAGAATAGAGAATTTGAGCAGAAGACTGATCGTTTCTGGGAGTTCCAAGAGCAATCCAACACCTG GGTTGAAGTGGAGCTGCCATATGAACTTGTCTCTTGTGTTAATGACAACTGTACTAAAGTGGGTAAAATTCATCCAGTAAAAAGAGATGTAGAAGAGAAC TCAGAAAGAGAGAATGATGATTCCAAGAAAAATGAGAATTTGAAAAGGAAGGTTGAAGATGGAGGAACAGAAGCGAATTCTGAGATTGTTCTGCCTTTGA GGAAGAGAATTTCTCTGACTAAAATGTCTGAGTCATCCATTTGGGTCACTGGTGAAAGTGGGTCTATCTATGAGAGGTTCTGGAATGGAATCCAGTGGGT GATAGCACCCCATGATCTACCAGTATTGACTGGTCATGCAATCTGTGTCTTTATTGTCAATCAAACTATTCTTACTCTATCAGAAGCAGGAACCCTATAT CAGATGATGCTCGGTGAGAGCTCACAGCCAATTTGGGTAGAGTTCACACCTACTCTCGATGAAAGCACAAATAGAGAAGCAGAAGAAAGTTCATTGATGC TAATAAATTCCGGCGTCATTTCTCATGATGGGCTGAAAATTTATTTCTGCACAAAGAATGGCTCGTTATTAGAACTCAGTGAGGCAGAGCCTCCAAGATG GGAAAATCACGGGCGACCACCTGGTGCAGATGTTGCAGCAATTGTTGATGCTGCTACTATTAGACCAGACGTAGTATATACCATAAGTTCTACAGGAGAT CTTTATGAATATGATAGGAGCTCAAAGCCATCATGGAAGAAGCATATATGGGCAGAAGGGACAGTAGCAGATGCTTCTCTGATGCCATCAAGGGGATGCA CACTACATGGCTTGAGTGGAGAATACTCCATCTCTCTTTTTCTTCTAACTAAGGGTGGTAAATTGGTAGAGAGACGATTAAACCAAAGAAAGTGGAAATG GATAGTCCATGGAAGTCCCAAAGATCATAAGTTGACATCTATCACACCAGTTGTACAAGATGAGACAAATGAAAAATTCTTATCATTATTTTTCACCACA TCGTCTGGATCGGTTTTTGAGTATCGAATATTGAAACAGTCAGGCACTGATCAGGAAAACCAAATTCCCGAAGCATGGTTGAGTCATATGCATCCTCCGC ATGCGAAAGTTGCAAGTGGAATTGCTGGGATACCACTTCAAGCTGGCAGAATAGTTTTCCCACTGCATGATGGTAGACTTGCAGAATTGCATCTACCTGG ACTGGGTGGAGAAAATACTGGGCCGAACCATCAAGTAAATCTCCGAAAAAGAGCATCGGTTAAATATGTATGGTCAATGATAGACGCCCCAGAGACTGAA GGTTGGAATGCAGAGTATTGCAGAGAAGAACGTGGACCCATGAACTGCCTTGAAGGCATAAAAGATGAGCCAAATGAACAAGGAATTACAAGATCAATGG CAAGAAGGCGAAAGGGAAGTAAAGCACAAGAAGATTACCTATTTGCAGGTGCCAATGGACCGAATAAAGTTTTGGAAGGATATAGTTTCCCAGATAATTG GATCAACAATAACTTTCGTCTGCGAATGATACATGGAGGCAAATCATTTTTCCTTGTTACTGATGATGGTTTGACTTATGAACATCTTTATGCCGAGAAT TTATGGCTGTGGCTGAGGCATGATCACTCAACACCAATGAAAGGTGCCCTTGGAAACTACAATGGAAGTCTCTTTTTGGTAGACATTTACGGGAGTCTGC TTATGAGAGAAAGGAGCGATGAGGGGCTAACATGGGTAAATTGCACTGCCATGAGGAATCTCGGGCGTGTTATTGGAGGCCCTCCATGGGATGGAATTCC AGGTAAAGATCCGAAAGTTACACCAGAAGATGCAATCTTCTTTGTGAGCAAAAATGGAAGGCTGCTGCAGTTCACAGTTGCCCTGAGGAAATTCAAATGG AAAGATTGTCGAAACCCTCCAGATACCAAAGTTGCAAGTATTGTTGACCAGGAGCTGTTCCGGGATAACGTAGTGTTTGTCACTGGAAGGAATGGGAGGC TATACCAGTACAACAAAGTGACTGAATTGTGGCATGAGCATTATCAGTCTCAACATTTGGTTCTATCAAGATCGCCAGGAACTGCTATGAGACCATCCTC ACTATCACTCACAGGCTCACTATTTATGCTTTCAGAAGATGGTGGACTAGTTGAATATCATTGGAATACTGGTGATGGCTGGAATTGGATTGAACATGGA ACACCTAATAAAGGTGTAACCTTGATCACTTCCCCTAGCCCATGTTTTGAAGGTAATCAACTTTTTCTTATAGGTTCAGATGGAAAAGTATACGTTAGGT ATATGGACCAAATGACATGGAGATGGAAAAACTGTGGCTTCCCTCATGTGGGACAATTAATGAATGAAGATCAAACACAAGAGAGGGGAAATGATAATAA TGAAGAAGTTTGCATAGATGAAGATTTTGCAGCCAGCTTGGAGAACGTTGCACGGAAGTACAGTGATTTTAATAGAAACTGTGACCCAAAGGTGGCACCA ACAAGGCCGATCCCATTTTCTGATGATTCAGTTATCTTCGAGCTCAGGGATGGAAGATTGGCAGAGATGCGAAGAGTGGAGGGCACTCATTGGGTATGGT CACGCACTATTGCCACTCCAACAACCTCGTGCATGGCTAATTATTGGACCGCTGTGGCTTCATGA
AA sequence Show only first row Show all	>Potri.001G255700.2 pacid=42792258 polypeptide=Potri.001G255700.2.p locus=Potri.001G255700 ID=Potri.001G255700.2.v4.1 annot-version=v4.1 MYRNLFITRFCHATMPCFHLIFFILVLLSLSLGSASWCPHNYAQQKNREFEQKTDRFWEFQEQSNTWVEVELPYELVSCVNDNCTKVGKIHPVKRDVEEN SERENDDSKKNENLKRKVEDGGTEANSEIVLPLRKRISLTKMSESSIWVTGESGSIYERFWNGIQWVIAPHDLPVLTGHAICVFIVNQTILTLSEAGTLY QMMLGESSQPIWVEFTPTLDESTNREAEESSLMLINSGVISHDGLKIYFCTKNGSLLELSEAEPPRWENHGRPPGADVAAIVDAATIRPDVVYTISSTGD LYEYDRSSKPSWKKHIWAEGTVADASLMPSRGCTLHGLSGEYSISLFLLTKGGKLVERRLNQRKWKWIVHGSPKDHKLTSITPVVQDETNEKFLSLFFTT SSGSVFEYRILKQSGTDQENQIPEAWLSHMHPPHAKVASGIAGIPLQAGRIVFPLHDGRLAELHLPGLGGENTGPNHQVNLRKRASVKYVWSMIDAPETE GWNAEYCREERGPMNCLEGIKDEPNEQGITRSMARRRKGSKAQEDYLFAGANGPNKVLEGYSFPDNWINNNFRLRMIHGGKSFFLVTDDGLTYEHLYAEN LWLWLRHDHSTPMKGALGNYNGSLFLVDIYGSLLMRERSDEGLTWVNCTAMRNLGRVIGGPPWDGIPGKDPKVTPEDAIFFVSKNGRLLQFTVALRKFKW KDCRNPPDTKVASIVDQELFRDNVVFVTGRNGRLYQYNKVTELWHEHYQSQHLVLSRSPGTAMRPSSLSLTGSLFMLSEDGGLVEYHWNTGDGWNWIEHG TPNKGVTLITSPSPCFEGNQLFLIGSDGKVYVRYMDQMTWRWKNCGFPHVGQLMNEDQTQERGNDNNEEVCIDEDFAASLENVARKYSDFNRNCDPKVAP TRPIPFSDDSVIFELRDGRLAEMRRVEGTHWVWSRTIATPTTSCMANYWTAVAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G255700 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035700 [exp]	4.24	0.8355
AT2G45720			ARM repeat superfamily protein...		Potri.014G076500 [exp]	10.72	0.7479
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.016G121800 [exp]	13.41	0.7872
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.014G125300 [exp]	14.28	0.7828
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.004G055700 [exp]	29.32	0.7516
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G027600 [exp]	37.24	0.7563	CESA2.3
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Potri.006G148100 [exp]	39.39	0.7821	NPR1.1
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.002G055100 [exp]	41.82	0.7335
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G045200 [exp]	44.89	0.7763
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020600 [exp]	48.00	0.7567

Compare expression of checked genes

Potri.001G255700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.