Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 929 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 892 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 875 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G17840 693 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 355 / 4e-112 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G01320 277 / 7e-83 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G55100 263 / 3e-78 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55090 245 / 5e-71 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT4G27420 243 / 6e-71 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G71960 243 / 7e-71 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051300 [exp] 1224 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 956 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 952 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056600 [exp] 764 / 0 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 738 / 0 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 706 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 700 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 571 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 570 / 0 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027354 [exp] 936 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 908 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 885 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 866 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 852 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027353 [exp] 736 / 0 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 634 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10035445 [exp] 609 / 0 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 602 / 0 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000338 [exp] 519 / 8e-179 AT3G21090 532 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.001G255900.1 pacid=42792044 polypeptide=Potri.001G255900.1.p locus=Potri.001G255900 ID=Potri.001G255900.1.v4.1 annot-version=v4.1 ATGGAGATAGAGCAGGTTATAATTAGCAGTGGTGTAGATGGTGGCTCTGGTGCTGGGAATGCGGAGGCAGGTTTATCAGGTGGAGGAGGAGGAGGAGACG AAGCAAGGTCTATGTACTTGGTCTGGGAGGCTTTAACAGTGGTTCTGCCAAATTTTGGCAGTGGACCTACAAGGAGATTGCTTAAAGGGCTAAACGGGTA CGCTGAGCCTGGTAAAATCATGGCTATTATGGGTCCATCTGGGTCTGGGAAATCCACCCTTCTTGATGCATTAGCAGGGAGACTTTCAGGAAATGTTTTG ATGACCGGAAACGTTCTACTTAATGGAAAGAAGAGGAGACTTGACTATGGTGGTGGAGCTTATGTAACACAAGAAAATACATTGTTGGGCACTCTCACAG TTAGAGAGACCCTCACTTACTCGGCTCATTTGAGGCTTCCAAGCAGCATGGCCAAAGCAGAGATTGATGACATTGTAGAGGGGACAATCATGGAAATGGG TCTCCAAGAGTGCAGTGATCGGCTAATTGGAAACTGGCATTTAAGAGGTATAAGTGGTGGGGAGAAGAAAAGACTAAGCATTGCACTTGAAACCCTCATT AGACCACAACTTCTGTTTCTTGATGAACCTACAAGTGGCCTGGACAGTGCCGCGGCTTTCTTTGTAATTCAAACTCTTAGAAATATTGCTCATGATGGAA GAACCGTTATCTCCTCCGTTCACCAGCCAAGTAGTGAAGTTTTCACTCTCTTTGATGACCTTTTCTTATTATCTGCTGGTGAAGCAGTTTATTTTGGAGA AGCAAAGATGGCAGTAGAGTTCTTTGCAGAAGCTGGATTCCCATGTCCAAGTAGAAGAAACCCTTCTGATCATTTCTTACGTTGTATTAATTCGGACTTC GACCTTGTCACTGCAACTCTGATGGGATCTCACAGGGAAATTCAAATTCCATCCGATCCCTTGGCAAATTTGCCAACAGCAGCGATCAAGGCATCTTTGG TCAAGAAGTACATATCCTCCAATCATGCAGTAAAAGCAAGAGCAAGGATTCAACAAATCTTGGCAATTAAAGGGCTTGTGATTAACATAAGAGGGGAAAA CCAAGCAAACTGGTGGAAACAACTTTCAACACTGACAAAGAGATCTTTCATTAATATGTGGAGAGATTTGGGGTACTATTGGGTTAGGATAATCGTCTAC ATCTTGCTGTCTATTTGCGTTGGTACCATGTTTTTAGATGTTGGCAAAGGCTATACAGCAATATTGGCCCACGGAGCTTGTGGGGGGTTTCTGTCAGGGT TTATGACATTCATGTCCGTTGGAGGCTTCCCTTCCTTCATTGAAGAACTGAAGGTTTTTTACAAGGAAAGGCTCAACGGATATTATGGGGTCGCGGTGTA TACAATGTCAAACTTTCTTTCTTCTTTTCCCTACTTGACTGTGATGTCATTTGGTACCTCCAGTATTACCTACTACATGGTGAAATTTCGATCTGAATTT TCAAATTTTCTGTATGTCTTCATGGCCCTTTTAAGCAGCATAGCAACTGTAGAGAGTTGCATGATGACTATAGCTTCGCTAGTCCCCAACTACCTAATGG GATTCGTTATCGGATCAGGATATATTGGAATCCTAATGATGACCTCTGGGTTTTTCCGATTGCTGCCTGATATTCCCAAGGTGTTCTGGCGCTACCCAAT TTCTTACATCAACTTCGGCGCATGGGGATTGCAGGGAGCATACAAAAACGACATGATTGGGCTGGAGTTTGATCCTTTAGTACCTGGTGGCCCAAAACTG AAAGGAGAAGAAGTTCTCACAACCGTGCTTGGTATTAGTCTTGATCATTCAAAATGGTGGGACCTAGCTGCTGTTGTGCTCATTCTCATAGCTTTCAGAC TCCTCTTCTTTGCCATTCTCAAGTTCAAGGAGAGAATTCTCCCCGTGTTTCGGAAACTTTGTGCCAAGAGAACTCTAAAACAACTGAAGAAGAGACCGTC TTTCACGAAGACTTCTTATTCACCCTTTCCTTCAATAAGGAACCAACCTGCTTATTCTTTGTCTTCGCAAGAGGGTCTCAGCTCTCCAGTTCCCTACTAG
AA sequence Show only first row Show all	>Potri.001G255900.1 pacid=42792044 polypeptide=Potri.001G255900.1.p locus=Potri.001G255900 ID=Potri.001G255900.1.v4.1 annot-version=v4.1 MEIEQVIISSGVDGGSGAGNAEAGLSGGGGGGDEARSMYLVWEALTVVLPNFGSGPTRRLLKGLNGYAEPGKIMAIMGPSGSGKSTLLDALAGRLSGNVL MTGNVLLNGKKRRLDYGGGAYVTQENTLLGTLTVRETLTYSAHLRLPSSMAKAEIDDIVEGTIMEMGLQECSDRLIGNWHLRGISGGEKKRLSIALETLI RPQLLFLDEPTSGLDSAAAFFVIQTLRNIAHDGRTVISSVHQPSSEVFTLFDDLFLLSAGEAVYFGEAKMAVEFFAEAGFPCPSRRNPSDHFLRCINSDF DLVTATLMGSHREIQIPSDPLANLPTAAIKASLVKKYISSNHAVKARARIQQILAIKGLVINIRGENQANWWKQLSTLTKRSFINMWRDLGYYWVRIIVY ILLSICVGTMFLDVGKGYTAILAHGACGGFLSGFMTFMSVGGFPSFIEELKVFYKERLNGYYGVAVYTMSNFLSSFPYLTVMSFGTSSITYYMVKFRSEF SNFLYVFMALLSSIATVESCMMTIASLVPNYLMGFVIGSGYIGILMMTSGFFRLLPDIPKVFWRYPISYINFGAWGLQGAYKNDMIGLEFDPLVPGGPKL KGEEVLTTVLGISLDHSKWWDLAAVVLILIAFRLLFFAILKFKERILPVFRKLCAKRTLKQLKKRPSFTKTSYSPFPSIRNQPAYSLSSQEGLSSPVPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255900 [exp]	0	1
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.002G139600 [exp]	5.56	0.9074
					Potri.001G255904 [exp]	5.65	0.9424
AT3G61420			BSD domain (BTF2-like transcri...		Potri.005G061366 [exp]	7.61	0.9084
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.001G263000 [exp]	8.24	0.9333	Pt-UBQ11.1
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Potri.003G118400 [exp]	11.87	0.8233
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Potri.013G039600 [exp]	15.39	0.8665
AT4G10590		UBP10	ubiquitin-specific protease 10...		Potri.016G067400 [exp]	24.37	0.9039
AT1G30760			FAD-binding Berberine family p...		Potri.011G161400 [exp]	25.80	0.8690
AT3G11310			unknown protein		Potri.010G022201 [exp]	28.10	0.9238
AT3G01820			P-loop containing nucleoside t...		Potri.001G333100 [exp]	30.49	0.8141

Compare expression of checked genes

Potri.001G255900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.