Plant FIBer expression Database

Potri.001G256000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51450 415 / 2e-141 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G051400
[exp]
588 / 0 AT1G51450 402 / 2e-136 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014912
[exp]
412 / 7e-141 AT1G51450 456 / 1e-157 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
Lus10027355
[exp]
394 / 5e-137 AT1G51450 413 / 2e-144 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
Lus10009316
[exp]
44 / 0.0003 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0004 Concanavalin PF00622 SPRY SPRY domain
Representative CDS sequence
>Potri.001G256000.2 pacid=42790915 polypeptide=Potri.001G256000.2.p locus=Potri.001G256000 ID=Potri.001G256000.2.v4.1 annot-version=v4.1
ATGGATTCCCTTCAAGCCACCTACGAAGACGAAGACGAAGAAGAAGACGAAGAACAACAACAAACCAACAACAGCGCCACCCACCACAACCCTTCTCCTC
CTCCCACCATCAGTCCCATTGACCTCGAGGAACGCCAAAACGGCACAGACCCACCTCAAAACGACGCTGAAACAACTCCAATTGACAACACAACTTCCAA
CCAACAACCTCAACGAGAGGACCCCTTTACACCAGCCTCCGAATACCTCTCCGAATCAGACCACCCGACAACCTCAAACGACAACGAGAAGCCCACGACC
AAATCTCCCAAAATTGAAGACACCGAAATCGAAGACATTGAAGACGATGGAGATGAAGAAGACCCACCTCCTAAAAAACAAAAACAACTCTCCTCTTTAA
CACAAAACCAAGAACCACCAGAACCTACGACAATAGCAGAAATCTTAAACAACGACAACAACAATGGAGCCAACGAATTCAAGAAACCAACCAAAATCAC
CCCAACAACAACAAAAAAGAAGTCGAAGAAAAAGAACAACAATAATGTCTGGGTCACAAGATCCACACGCAAAGGCAAGAAAAAAACAAAACAAAACCCA
CAAAACACACCATCAGAAGACACTGTTTTGATCTCTCCAATCCCAAGATTCCCTGACAAAAGCGACGACACCCCGGCCTTACAAATCTGCCTGTCTAAAG
TATATAAAGCAGAGAAAGCCGAATTGAGCGAAGATAGGATGAGTGCAGGGAGTACTAAAGGGTATAGAATGGTGAGAGCTACAAGAGGGGTATGTGAAGG
AGCTTGGTATTTTGAAATTAAAGTGGTTAGTTTAGGAGAAACCGGCCACACACGACTTGGGTGGTCTACGGAGAAAGGGGATTTGCAGGCGCCGGTTGGG
TATGATGGGAATAGTTTTGGGTACAGAGATATTGATGGGAGTAAAGTGCACAAGGCATTGAGGGAGAAGTATGGCGAGGAAGGTTATAAGGAAGGGGATG
TTGTTGGGTTTTATATTAACTTGCCGGAGGGGCAGTTGTATACTCCTAAACCTGCTCATTTGGTTTGGTATAAAGGACAGAGGTATGTTTGTGCTCCTGA
CGCTAAGGAAGATCCTCCCAAGATTGTTCCTGGAAGTGAGATATCTTTCTTCAAAAATGGAGTCTGTCAAGGTGTTGCTTTTAAGGATTTATTTGGTGGT
CGTTACTACCCTGCTGCTTCAATGTACACTCTCCCCAGTCAGCCAAATTGTGTGGTGAAGTTCAACTTTGGCCCCGACTTTGAATTCTTTCCAGAGGATT
TTGGAGGACGTCCAGTTCCCAAACCCATGATTGATGTTCCTTACCATGGGTTTGATAATCGTTCTGAAAATGGTGTCACCGAGGAGAAGAAACATTAG
AA sequence
>Potri.001G256000.2 pacid=42790915 polypeptide=Potri.001G256000.2.p locus=Potri.001G256000 ID=Potri.001G256000.2.v4.1 annot-version=v4.1
MDSLQATYEDEDEEEDEEQQQTNNSATHHNPSPPPTISPIDLEERQNGTDPPQNDAETTPIDNTTSNQQPQREDPFTPASEYLSESDHPTTSNDNEKPTT
KSPKIEDTEIEDIEDDGDEEDPPPKKQKQLSSLTQNQEPPEPTTIAEILNNDNNNGANEFKKPTKITPTTTKKKSKKKNNNNVWVTRSTRKGKKKTKQNP
QNTPSEDTVLISPIPRFPDKSDDTPALQICLSKVYKAEKAELSEDRMSAGSTKGYRMVRATRGVCEGAWYFEIKVVSLGETGHTRLGWSTEKGDLQAPVG
YDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVVGFYINLPEGQLYTPKPAHLVWYKGQRYVCAPDAKEDPPKIVPGSEISFFKNGVCQGVAFKDLFGG
RYYPAASMYTLPSQPNCVVKFNFGPDFEFFPEDFGGRPVPKPMIDVPYHGFDNRSENGVTEEKKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51450 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRA... Potri.001G256000
[exp]
0 1
Potri.004G212751
[exp]
3.46 0.8837
Potri.019G036280
[exp]
5.19 0.8650
AT5G53420 CCT motif family protein (.1.2... Potri.015G014000
[exp]
7.48 0.8356
AT4G32290 Core-2/I-branching beta-1,6-N-... Potri.006G254800
[exp]
9.21 0.8007
AT1G07630 PLL5 pol-like 5 (.1) Potri.009G030600
[exp]
10.09 0.7111
AT3G20640 bHLH bHLH123 basic helix-loop-helix (bHLH) ... Potri.011G129500
[exp]
10.95 0.8325
Potri.019G031732
[exp]
11.48 0.8211
Potri.019G059350
[exp]
13.03 0.8513
AT4G27500 PPI1 proton pump interactor 1 (.1) Potri.001G399400
[exp]
14.89 0.7299 Pt-PPI1.4
AT1G09680 Pentatricopeptide repeat (PPR)... Potri.017G131400
[exp]
15.29 0.7892

Potri.001G256000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.