Plant FIBer expression Database

Potri.001G256100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21070 774 / 0 NADK1, ATNADK-1 NAD kinase 1 (.1.2)
AT1G21640 275 / 4e-82 ATNADK2, NADK2, ATNADK-2 NAD kinase 2 (.1.2)
AT3G21080 42 / 0.0008 ABC transporter-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G051500
[exp]
946 / 0 AT3G21070 754 / 0.0 NAD kinase 1 (.1.2)
Potri.002G078700
[exp]
278 / 6e-83 AT1G21640 1191 / 0.0 NAD kinase 2 (.1.2)
Potri.005G182600
[exp]
276 / 2e-82 AT1G21640 699 / 0.0 NAD kinase 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003178
[exp]
806 / 0 AT3G21070 768 / 0.0 NAD kinase 1 (.1.2)
Lus10009958
[exp]
739 / 0 AT3G21070 700 / 0.0 NAD kinase 1 (.1.2)
Lus10000856
[exp]
273 / 5e-81 AT1G21640 1205 / 0.0 NAD kinase 2 (.1.2)
Lus10029717
[exp]
266 / 2e-78 AT1G21640 1154 / 0.0 NAD kinase 2 (.1.2)
Lus10028677
[exp]
248 / 4e-71 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0240 PFK PF01513 NAD_kinase ATP-NAD kinase
Representative CDS sequence
>Potri.001G256100.5 pacid=42788600 polypeptide=Potri.001G256100.5.p locus=Potri.001G256100 ID=Potri.001G256100.5.v4.1 annot-version=v4.1
ATGACTACTAGCAAGCTCAATTCCACTGATCCTCATGGAAATGGAGATGCAAGTTTGCCGTGTTCGCTGCCTGACAATAAATTTAGTGATTCACTTACCC
TTTTCCATTCTGAGAAGGCAGTGCAGGAGCTTCTTCAACAGACTCCAATCCAACACACTGATGACCATCTCATAGAGTTCTCAGAGGCTCTTAGAACTGT
TGCCAAGGCATTAAAACAAGCTGCCGAAGGAAAGGCTTTTGCTCAAGCTGAGGCTGCTGAATGGAAACGTAGATTTGAACTGGAAAGGGCACAGAATCAA
CAGCTAGAGCACAAAGGAAAGTCACCAGGGGAGTGTAATGGTGATATTAATGCTCAGCGGATGGAAAACTCAACTAACCAACCCATGCTGAGAAATGAAG
CAAATGAACAATCTGAAAATTGCTGTACAAATGGGCTTTGCTCTCATGAAATTCTTCATGATGGAGAGACTGACTCCCATGCCAAAGCAGTTCAAAACAA
AATGATGAGAAAGGTTCACAGCATCACATGTTTGGATGGGAACCAGCTAGTCCTGGCATCTTTCAAGCTTTCATGGTGGTGTAAAGGTGACATTAGTGAT
CAACACAAACATGATATTGTCTCTTTTGAAAGAGGAAATATAACAACTGCAGGGCGCAGCAGCAAACAGATTTCTTTGAAGTGGGAATCTAACCCACAGA
CTGTGCTAGTTATGACCAAACCAAATTCAACCTCTGTTCAGATTCTATGTGCAGAAATGATCAGATGGATGAAAGAGCATAAAAAATTAAACATTTATGT
AGAACCACGTGTGATGGGTGAACTTCTATCAGAATCATCTTACTTCAACTTTGTGCAAACTTGGAAAGATGAAAAGGAAATTTTGAGCCTGCACACAAAA
GTTGACCTTGTTGTGACTCTTGGTGGGGATGGTACTGTTCTTTGGGCAGCATCGATGTTCAAAGGACCGGTTCCTCCAATTGTATCATTTTCTTTGGGGT
CTCTTGGATTTATGACACCATTCCATAGCGAACAGTACCGAGATTGCCTTGATTCAATCCTTAAAGGTCCAATTAGTATAACATTACGACACCGAATGCA
ATGCCATGTTATTAGAGATGCAGCTAAAAACGAGTATGAAACTGAGGAGCCTATACTTGTTTTGAATGAGGTTACAATTGACCGTGGAATATCATCATTC
CTTGCAAATTTGGAATGCTATTGTGACAACTCTTTTGTCACACGCGTGCAAGGAGATGGATTAATTTTATCAACTACATCAGGTAGCACTGCATATTCAT
TGGGAGCTGGAGGATCAATGGTTCATCCCCAGGTCCCTGGAATTCTGTTTACACCAATTTGCCCGCATTCCTTATCGTTTCGACCTCTGATATTACCTGA
GCATGTAACAATACGAGTTCAAGTTCCATTCAACAGCAGAAGCCCTGCTTGGGCCTCATTTGATGGCAAGGACAGGAAACAGCTGGCAGCTGGTGATGCG
CTTGTGTGCAGCATGGCACCATGGCCTGTTCCAACAGCATGCCAGATTGATTCTACAAACGACTTTTTGCGCAGCATCCACGATGGCCTCCACTGGAATC
TCAGAAAGACCCAATCTGTCGATGGCCCTCAGGATTTATAA
AA sequence
>Potri.001G256100.5 pacid=42788600 polypeptide=Potri.001G256100.5.p locus=Potri.001G256100 ID=Potri.001G256100.5.v4.1 annot-version=v4.1
MTTSKLNSTDPHGNGDASLPCSLPDNKFSDSLTLFHSEKAVQELLQQTPIQHTDDHLIEFSEALRTVAKALKQAAEGKAFAQAEAAEWKRRFELERAQNQ
QLEHKGKSPGECNGDINAQRMENSTNQPMLRNEANEQSENCCTNGLCSHEILHDGETDSHAKAVQNKMMRKVHSITCLDGNQLVLASFKLSWWCKGDISD
QHKHDIVSFERGNITTAGRSSKQISLKWESNPQTVLVMTKPNSTSVQILCAEMIRWMKEHKKLNIYVEPRVMGELLSESSYFNFVQTWKDEKEILSLHTK
VDLVVTLGGDGTVLWAASMFKGPVPPIVSFSLGSLGFMTPFHSEQYRDCLDSILKGPISITLRHRMQCHVIRDAAKNEYETEEPILVLNEVTIDRGISSF
LANLECYCDNSFVTRVQGDGLILSTTSGSTAYSLGAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTIRVQVPFNSRSPAWASFDGKDRKQLAAGDA
LVCSMAPWPVPTACQIDSTNDFLRSIHDGLHWNLRKTQSVDGPQDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G21070 NADK1, ATNADK-1 NAD kinase 1 (.1.2) Potri.001G256100
[exp]
0 1
AT4G25450 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRI... Potri.015G136700
[exp]
1.41 0.9505 Pt-NAP8.1
AT3G07565 Protein of unknown function (D... Potri.014G197300
[exp]
3.46 0.9400
AT5G36210 alpha/beta-Hydrolases superfam... Potri.002G128700
[exp]
4.47 0.9228
AT1G62960 ACS10 ACC synthase 10 (.1) Potri.003G117700
[exp]
5.47 0.9333 Pt-ACS10.1
AT3G51880 AtHMGB1, NFD1, ... NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.010G189900
[exp]
6.16 0.9437
AT5G27320 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/... Potri.005G040600
[exp]
8.42 0.9061
AT1G69830 ATAMY3, AMY3 alpha-amylase-like 3 (.1) Potri.010G092900
[exp]
10.00 0.9292
AT2G32170 S-adenosyl-L-methionine-depend... Potri.016G021400
[exp]
10.77 0.9171
AT5G53350 CLPX CLP protease regulatory subuni... Potri.015G012900
[exp]
10.95 0.9310
AT1G21640 ATNADK2, NADK2,... NAD kinase 2 (.1.2) Potri.002G078700
[exp]
11.83 0.9398 NADK2.2

Potri.001G256100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.