Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CCRL5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 552 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 550 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 386 / 5e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 376 / 3e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 369 / 5e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09500 350 / 6e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 347 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 290 / 1e-96 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT4G35420 288 / 2e-96 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G58490 281 / 2e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052000 [exp] 635 / 0 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 484 / 2e-173 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 443 / 2e-157 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 434 / 1e-153 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 306 / 4e-103 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 300 / 5e-101 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 300 / 7e-101 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 300 / 7e-101 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 298 / 3e-100 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009955 [exp] 571 / 0 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 472 / 6e-169 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 424 / 1e-149 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 417 / 2e-147 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 417 / 5e-147 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 407 / 3e-143 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 375 / 2e-130 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 377 / 3e-124 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10029484 [exp] 357 / 3e-124 AT5G19440 355 / 1e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019732 [exp] 348 / 7e-120 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.001G256400.3 pacid=42788076 polypeptide=Potri.001G256400.3.p locus=Potri.001G256400 ID=Potri.001G256400.3.v4.1 annot-version=v4.1 ATGAGCACTGGAGCCGGAAAGATCGTGTGCGTGACTGGAGCCTCGGGTTATATAGCTTCATGGATAGTCAAGCTCCTCCTCTCACGTGGTTACACTGTCA AGGCCTCTGTTCGTGACCCAAATGATCCCAAAAAGACACAGCACTTGCGTGCACTCAGAGGAGCTCAGGAGAGACTTGAGCTGGTCAAAGCAAATTTATT GGAAGAAGGTTCCTTTGATTCTATTGTTGAAGGGTGTGAAGGTGTTTTCCACACTGCATCTCCTTTTTATCATGATGTCAAGGACCCACAGGCAGAGTTG CTTGATCCTGCAGTGAAAGGAACACTCAATGTCCTTGGCTCATGTGCAAGACACCCATCAATCAAACGAGTTGTTTTAACATCTTCTATGGCTGCAGTTG CTTACAATAGGAAACCTCGGACTCCAGATGTAGTAGTGGATGAAACTTGGTTTTCGGATCCGGAACTGTGTAGAGAATCTAAGCTTTGGTACGTGCTTTC AAAGACATTGGCTGAGGATGCTGCATGGAAATTTGCAAAAGAAAAGGGTATGGACATGGTTGCAATAAATCCATCAATGGTTATTGGTCCTCTCTTGCAG CCAACACTTAATACAAGTGCTGCAGCAATTTTAAGCCTAATAAAAGGAGCACAAACTTTCTCCAATGCATCTTTTGGATGGATAAATGTTAAAGATGTTG CCAATGCACACATACAAGCATTTGAGCTGTCATCAGCTAGTGGGAGATATTGTTTGGTTGAGAGAGTGGCACACCACTCAGAAGTAGTGAAGATTCTGCG AGAGCTTTATCCTGATCTCCAACTCCCGGAAAAGTGCGCCGATGATAAGCCATATGTGCCAATCTATCAGGTTTCCAAGGAAAAAGCCAAAAGCTTGGGT ATTGAATTCATTCCTTTGGAAGCTAGCATCAAGGAAACCGTGGAAAGCTTGAAGGAGAAAGGATTCGTCAGTTTTTGA
AA sequence Show only first row Show all	>Potri.001G256400.3 pacid=42788076 polypeptide=Potri.001G256400.3.p locus=Potri.001G256400 ID=Potri.001G256400.3.v4.1 annot-version=v4.1 MSTGAGKIVCVTGASGYIASWIVKLLLSRGYTVKASVRDPNDPKKTQHLRALRGAQERLELVKANLLEEGSFDSIVEGCEGVFHTASPFYHDVKDPQAEL LDPAVKGTLNVLGSCARHPSIKRVVLTSSMAAVAYNRKPRTPDVVVDETWFSDPELCRESKLWYVLSKTLAEDAAWKFAKEKGMDMVAINPSMVIGPLLQ PTLNTSAAAILSLIKGAQTFSNASFGWINVKDVANAHIQAFELSSASGRYCLVERVAHHSEVVKILRELYPDLQLPEKCADDKPYVPIYQVSKEKAKSLG IEFIPLEASIKETVESLKEKGFVSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.001G256400 [exp]	0	1	CCRL5
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.003G204801 [exp]	13.85	0.7321
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Potri.009G109800 [exp]	19.59	0.7301
AT5G35110			unknown protein		Potri.018G113700 [exp]	19.89	0.6904
AT4G35690			Arabidopsis protein of unknown...		Potri.005G103600 [exp]	29.12	0.7240
AT2G25060		AtENODL14	early nodulin-like protein 14 ...		Potri.018G128900 [exp]	31.84	0.7167
AT3G15260			Protein phosphatase 2C family ...		Potri.011G116700 [exp]	32.90	0.6732
					Potri.014G178900 [exp]	33.01	0.7236
AT2G38905			Low temperature and salt respo...		Potri.008G044300 [exp]	37.94	0.7059
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.013G101100 [exp]	39.94	0.6962
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.001G384100 [exp]	42.98	0.6881

Compare expression of checked genes

Potri.001G256400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.