Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04070 189 / 1e-55 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G01720 186 / 6e-55 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G77450 184 / 6e-55 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G61110 183 / 1e-53 NAC ANAC025 NAC domain containing protein 25 (.1) AT4G27410 182 / 1e-53 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G69490 174 / 9e-51 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT3G15500 174 / 6e-50 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT3G15510 174 / 1e-49 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G52880 172 / 3e-49 NAC ATNAM, NAM, ANAC018, NARS2 NAC-REGULATED SEED MORPHOLOGY 2, Arabidopsis NAC domain containing protein 18, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G08790 169 / 7e-49 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052200 [exp] 412 / 6e-140 AT4G27410 188 / 1e-55 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.009G052300 [exp] 260 / 2e-82 AT1G01720 179 / 2e-53 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.019G031400 [exp] 202 / 2e-60 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.013G054000 [exp] 199 / 4e-59 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.002G081000 [exp] 191 / 1e-56 AT1G01720 416 / 5e-148 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G123500 [exp] 191 / 6e-56 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.005G180200 [exp] 187 / 2e-55 AT1G01720 392 / 9e-139 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G404400 [exp] 188 / 7e-55 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.003G103500 [exp] 185 / 2e-54 AT1G69490 117 / 5e-31 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003847 [exp] 215 / 1e-65 AT1G61110 196 / 3e-60 NAC domain containing protein 25 (.1) Lus10002083 [exp] 204 / 1e-58 AT5G08790 225 / 7e-69 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10021992 [exp] 198 / 2e-58 AT3G04070 295 / 1e-97 NAC domain containing protein 47 (.1.2) Lus10042531 [exp] 197 / 6e-58 AT3G04070 303 / 4e-101 NAC domain containing protein 47 (.1.2) Lus10003269 [exp] 196 / 8e-58 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10006547 [exp] 196 / 9e-58 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10027357 [exp] 197 / 4e-57 AT3G04070 172 / 3e-50 NAC domain containing protein 47 (.1.2) Lus10032657 [exp] 190 / 3e-55 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10043095 [exp] 188 / 9e-55 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10025690 [exp] 185 / 2e-54 AT1G01720 405 / 1e-143 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.001G256600.2 pacid=42790082 polypeptide=Potri.001G256600.2.p locus=Potri.001G256600 ID=Potri.001G256600.2.v4.1 annot-version=v4.1 ATGTCGTCGTCCGGAGAAGAAAATTGTTCGCAGAGTCGTACAATGCAGTTTCTTGAGGAACCAAAGCCACATGAGCAGCCTTCTGTTTCCACTCCATCGA CATCAAACGTCCCTTCAAACCCTCCTGCATCACCATCGCAACCCCTGATTGCTTCAAACCCATCACCACCCCAAGCCCTGATGGCTTCTAACTCATCACC ACCACCAGTGCCGCAGCCACCTACCATGAATCCACCGTTTCAGGCACTTTCTACCCCCACTCCACGACCACCACCACCACAAAGATTTGCTAATTATGAA GATAGCGATAGGTATTTCAATAGTTTCCCACCTGGATATAGATTTCGCCCTCATGATCATGAGCTGGTGTTGCATTACTTGGACAAGAAAGTCAAGGGTC TGCCATTGCCTATGAACAGGATTATTAATGCTGATCTCTATCAATTCGATCCCGAGGATCTTGCAGCTCAATATAGTCATCATGGAGAAAAAGAATGGTA CTTTTTCACACCGAGGAACAGAAAGTATAAAAACGGAACTAGACCGAATCGAGCGGCAGGTGGTGGATATTGGAAAGCCACTGGAGCTGATAAGGGAATC ACGTATGAAAAACGTGTTATTGAAGCTGGTAAAAAAATCACATACCAGAAAACGCTTGTTGGACACAGGAAGGCGCTCGTTTATTATGCCGGAAAGCCTC CAAAGGGTGACAAAACCAACTGGATAATGCATGAGTTTAGATTGGATGATTCCCCGCTTCATGTCAGAAATAATAGAGACGACATGAGGCTGGATGACTG CGTTCTGTGCAGGATTTACAAGAAACGTGAGAAGAGTACTACTAATGCTAGTACCAATGTCAGAAATCGGCAAAGTAATGAGGAAAATCCTTTATTGACA ATCGATGATGATGATGAAGATTACATAAACGATCATGATTATGATCCAAATCATCTCTCTGCTATAGAGGCTAGCTTTGCCGGGGAGATTTACGGCATGG TTACTAATTCTTTAGAGAATTCATTCCCGATACTTGATGAGTTAAGCCAACAACAGACTGGTACAAGCATATTCCCAGATGCTAATAACTTCTTTATGTT TCAAGATTCACAGATCCCTGGTTTGGAGGAGACATTTGGAACTCCTGCCCCAATGGACTCCGTTAATCCTGAAGACTGGTCATCCGAGCAAATGGGACTC CAAGATGAATTTCTGAATCCTACATACTCTTCTCCTTTTAATATCCCTGACCATTTTTTTAACCTCTATTCTATCATGCCAACTAATCTTCCAATGAATC CTTCTCCTCATGTCAACATTTGTCCCATGAACACTGCTCCTATTCGCAGCCTTCCTCCCATGAATACTGCCCCTTCCACTGGCGACCTTCCTCCCATAAA TACTGATCCACTTGCTGCTCCCTTTCCTCCCGCAAATAGTCAGCCAACCTCGGAGATAATGAATGCTGCTCCCAATCATCCTGGACAGCCACCTCAGCAT CGATGA
AA sequence Show only first row Show all	>Potri.001G256600.2 pacid=42790082 polypeptide=Potri.001G256600.2.p locus=Potri.001G256600 ID=Potri.001G256600.2.v4.1 annot-version=v4.1 MSSSGEENCSQSRTMQFLEEPKPHEQPSVSTPSTSNVPSNPPASPSQPLIASNPSPPQALMASNSSPPPVPQPPTMNPPFQALSTPTPRPPPPQRFANYE DSDRYFNSFPPGYRFRPHDHELVLHYLDKKVKGLPLPMNRIINADLYQFDPEDLAAQYSHHGEKEWYFFTPRNRKYKNGTRPNRAAGGGYWKATGADKGI TYEKRVIEAGKKITYQKTLVGHRKALVYYAGKPPKGDKTNWIMHEFRLDDSPLHVRNNRDDMRLDDCVLCRIYKKREKSTTNASTNVRNRQSNEENPLLT IDDDDEDYINDHDYDPNHLSAIEASFAGEIYGMVTNSLENSFPILDELSQQQTGTSIFPDANNFFMFQDSQIPGLEETFGTPAPMDSVNPEDWSSEQMGL QDEFLNPTYSSPFNIPDHFFNLYSIMPTNLPMNPSPHVNICPMNTAPIRSLPPMNTAPSTGDLPPINTDPLAAPFPPANSQPTSEIMNAAPNHPGQPPQH R

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Potri.001G256600 [exp]	0	1
AT1G24400		ATLHT2, AATL2, ...	ARABIDOPSIS LYSINE HISTIDINE T...		Potri.008G179000 [exp]	1.41	0.9904
AT5G53540			P-loop containing nucleoside t...		Potri.012G022985 [exp]	2.00	0.9808
AT3G56180			Protein of unknown function (D...		Potri.008G075100 [exp]	2.44	0.9870
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.006G001600 [exp]	4.47	0.9268
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.013G012666 [exp]	5.47	0.9505
AT3G19080			SWIB complex BAF60b domain-con...		Potri.007G039350 [exp]	8.77	0.9075
					Potri.013G012733 [exp]	15.23	0.8228
AT3G21690			MATE efflux family protein (.1...		Potri.014G153100 [exp]	18.57	0.8765
AT4G02550			unknown protein		Potri.011G088750 [exp]	23.36	0.7140
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073541 [exp]	24.81	0.7738

Compare expression of checked genes

Potri.001G256600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.