Plant FIBer expression Database

Potri.001G256700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51405 327 / 1e-106 myosin-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G052400
[exp]
769 / 0 AT1G51405 294 / 9e-94 myosin-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009954
[exp]
337 / 2e-110 AT1G51405 289 / 2e-92 myosin-related (.1)
Lus10003186
[exp]
311 / 4e-101 AT1G51405 274 / 1e-87 myosin-related (.1)
PFAM info
Representative CDS sequence
>Potri.001G256700.2 pacid=42791193 polypeptide=Potri.001G256700.2.p locus=Potri.001G256700 ID=Potri.001G256700.2.v4.1 annot-version=v4.1
ATGGATAAAGTATCAACAATTACAACATTGACATCAAGAAGGCCAAAATGGCAATACCCACCGGCCCAACCAACACCAAGAATCCTCCATTTACCTCGCA
GGCCTCGCAGGAAACAAGTGCCAAAGTCCAATGCTTCAAAGCCAAGTTCACAAAGAGACAGGAAGGGGAAGTTAGAAGTTTTGTTTGATCAAGAAAGAGG
GTTTGCTAGAGGGGCTATGCCAATTTTGATGGTTGGTGGTATCAGGGGTGATCAGTGCCTCGAGGAAGAGAGGAGGGAGAGAGTGGAGGAGAGGGAAAGC
GTGGTGATGGAGGAGGAGAAGTGGAGGTTCCAAGCTGAGATGTTGAGGGCAGAGTGTAATTTGTTAAGGATGGAAAGGGAGATTGCTGTCAAGAAGATGG
AGAGAAGAAGGGTTCAAATGGAGAGGATTCTAAGATCTGCAGTTCGAGCTCTGCTTTCTGTGAGAAAAGGGATTTGTGATGGCAAGGATGTGAGAATGGT
ATTGGACGAAGAGATTCAAGAATTGATTGAGAAGCTAGAGAGGTTGCAAAGAAGATCAGGAGTTAAGGATTTAGAGGGTCGAAAGTGTAGTAATTTAGAT
AGACAAGTATCTATTCTTCGAAGACGGCTAGAGAAGTTCGGAGGAGAATCGGACGGGATATGTGTTAAGGAGATCCAAGAGATGGCAGAAGCAAGCTTGT
CCATCAAAACAAATTGCAGTGTCTATGAGACTTCTGCTTCAAATCACAGTTGCAATCAGATGGAGATGCTGAGAAGGAAAATGGAGGGATTGTCGAATGG
AAGCTTGTTAGAGAGAATGGAAGATGAGTATGGGTCGATGCTCTCTACAGCCAGCAGTTCTGCTACCAACTCTGCCTCCACTTCCAAGAGAAAAGAGTTT
CCCGATATGCCTTCATCTTCAACAAGACAACCATGCAAGGAGACAAAGCCCGGTGAGGAGAAAGCATGCTCTGGGCGCTGCAAGGTTATATTGCGGAGAG
TCATCGAGCAAGTTCGGGCTGAGACAGAGCAATGGTCCCAAATGCAAGGGATTCTGGGGCAAGTCAGGAAAGAGATGGAAGAGCTGCAGGCTTCTAGAGA
TTTTTGGGAAGATCGAGCACTTGATTCTGATTTTGAGATTCAATCCCTGAATTCTGCTATGCAAGAGTGGAGACAGAAAGCCCTCTCTTCTGAAGCCAAG
GAAAATGAGCTACAAAATCAGGTAGCTGTGCTTCATGTTGAGCTCGAGAGGCTGAGGAAGGCAAGTGCTAAAGAAACATCAAGGTCTAAAAATTTACCAT
CGGTTTCTTTGGACGCTCCAAATGAGACGGAGAAGCGAGTATTGGTTTGTCGCTTAAAGGAAAACTGCAATACCAATGATGATTGTCGCAAGCAGAAGGC
GGCCTTTAGTGATGGAAGAAGAAAGCCACACGCCTGCACCGGTGGGCTTGATGCCCCGAAACGCTCTCCTTTCGGAGATATTGGAAATTCATCTCCCTTG
GCGAGGCAAAATAGTAGAGCAGTTTTCCCTTTGCACTACCTTGCGCAGGAAAAGTTTAATTTCTGA
AA sequence
>Potri.001G256700.2 pacid=42791193 polypeptide=Potri.001G256700.2.p locus=Potri.001G256700 ID=Potri.001G256700.2.v4.1 annot-version=v4.1
MDKVSTITTLTSRRPKWQYPPAQPTPRILHLPRRPRRKQVPKSNASKPSSQRDRKGKLEVLFDQERGFARGAMPILMVGGIRGDQCLEEERRERVEERES
VVMEEEKWRFQAEMLRAECNLLRMEREIAVKKMERRRVQMERILRSAVRALLSVRKGICDGKDVRMVLDEEIQELIEKLERLQRRSGVKDLEGRKCSNLD
RQVSILRRRLEKFGGESDGICVKEIQEMAEASLSIKTNCSVYETSASNHSCNQMEMLRRKMEGLSNGSLLERMEDEYGSMLSTASSSATNSASTSKRKEF
PDMPSSSTRQPCKETKPGEEKACSGRCKVILRRVIEQVRAETEQWSQMQGILGQVRKEMEELQASRDFWEDRALDSDFEIQSLNSAMQEWRQKALSSEAK
ENELQNQVAVLHVELERLRKASAKETSRSKNLPSVSLDAPNETEKRVLVCRLKENCNTNDDCRKQKAAFSDGRRKPHACTGGLDAPKRSPFGDIGNSSPL
ARQNSRAVFPLHYLAQEKFNF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51405 myosin-related (.1) Potri.001G256700
[exp]
0 1
AT3G63300 FKD1 FORKED 1 (.1.2) Potri.005G213800
[exp]
1.00 0.9132
AT5G06270 unknown protein Potri.006G206000
[exp]
1.41 0.9115
AT5G07280 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCES... Potri.015G141200
[exp]
2.44 0.8870 Pt-EMS1.1
AT1G34300 lectin protein kinase family p... Potri.016G102700
[exp]
3.16 0.8732
AT2G41540 GPDHC1 6-phosphogluconate dehydrogena... Potri.006G046900
[exp]
4.00 0.8839
AT5G13550 SULTR4;1 sulfate transporter 4.1 (.1) Potri.008G049500
[exp]
4.47 0.8179
AT3G21100 RNA-binding (RRM/RBD/RNP motif... Potri.001G255400
[exp]
6.63 0.8395
AT5G12460 Protein of unknown function (D... Potri.009G051600
[exp]
9.79 0.8518
AT4G11610 NTRB, ATNTRB C2 calcium/lipid-binding plant... Potri.001G105400
[exp]
11.22 0.8572
AT2G22840 GRF ATGRF1 growth-regulating factor 1 (.1... Potri.014G012800
[exp]
11.22 0.8548

Potri.001G256700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.