Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58684 404 / 2e-143 Ribosomal protein S5 family protein (.1) AT1G59359 404 / 2e-143 Ribosomal protein S5 family protein (.1) AT1G58983 404 / 2e-143 Ribosomal protein S5 family protein (.1) AT1G58380 403 / 4e-143 XW6 Ribosomal protein S5 family protein (.1) AT3G57490 403 / 4e-143 Ribosomal protein S5 family protein (.1) AT2G41840 402 / 1e-142 Ribosomal protein S5 family protein (.1) AT2G33800 73 / 9e-15 EMB3113 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) AT1G64880 43 / 0.0002 Ribosomal protein S5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052400 [exp] 432 / 1e-154 AT3G57490 417 / 7e-149 Ribosomal protein S5 family protein (.1) Potri.016G055000 [exp] 431 / 2e-154 AT2G41840 417 / 1e-148 Ribosomal protein S5 family protein (.1) Potri.011G053900 [exp] 67 / 9e-13 AT2G33800 246 / 1e-80 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Potri.004G045700 [exp] 66 / 3e-12 AT2G33800 316 / 6e-108 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Potri.013G076200 [exp] 42 / 0.0003 AT1G64880 532 / 0.0 Ribosomal protein S5 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030130 [exp] 444 / 1e-159 AT2G41840 412 / 1e-146 Ribosomal protein S5 family protein (.1) Lus10014909 [exp] 443 / 5e-159 AT3G57490 414 / 9e-148 Ribosomal protein S5 family protein (.1) Lus10027358 [exp] 442 / 9e-159 AT3G57490 414 / 1e-147 Ribosomal protein S5 family protein (.1) Lus10009952 [exp] 439 / 1e-154 AT3G57490 410 / 7e-143 Ribosomal protein S5 family protein (.1) Lus10030129 [exp] 426 / 6e-153 AT3G57490 390 / 1e-138 Ribosomal protein S5 family protein (.1) Lus10025445 [exp] 63 / 3e-11 AT2G33800 357 / 3e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Lus10015317 [exp] 63 / 4e-11 AT2G33800 358 / 2e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00333 [poplar] [flax] Ribosomal_S5 Ribosomal protein S5, N-terminal domain CL0329 [poplar] [flax] S5 PF03719 [poplar] [flax] Ribosomal_S5_C Ribosomal protein S5, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G256800.1 pacid=42789053 polypeptide=Potri.001G256800.1.p locus=Potri.001G256800 ID=Potri.001G256800.1.v4.1 annot-version=v4.1 ATGGCAGACAGAGGAGCAGGAGGAGAACGGGGAGGCGACCGTGGAGCCTTCCGCCGTGGATTCGGCGGCCCACGCGGAGAACGCGGAGGACGAGGTGGTC GCCGCCGTGCTCGCCGTGATGAGGAGGAAAAATGGGTCCCAGTTACCAAGCTTGGCCGTCTCGTTCGCGACGGAAAAATCCGATCTCTCGAACAAATCTA CCTCCACTCACTCCCAATCAAAGAGTATCAAATTATTGACACCCTTGTTGGACCAGGCATGAAGGATGAGGTCATGAAGATCACTCCGGTTCAGAAACAA ACACGTGCCGGTCAAAGGACTAGGTTTAAGGCCTTTGTGGTTGTTGGTGATGGGAATGGACACGTGGGTTTGGGAGTTAAGTGTTCGAAGGAAGTGGCGA CTGCCATTCGTGGGGCTATTATACTGGCCAAATTGTCGGTTATTCCTGTGAGGAGAGGGTATTGGGGTAACAAAATTGGGCAGCCACATACTGTGCCTTG TAAGGTTACTGGGAAGTGTGGGTCTGTAACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCGGGAATTGTCGCGGCTAGAGTGCCGAAGAAGGTGCTTCAA TTTGCTGGGATTGAGGATGTTTTTACGTCTTCCAGAGGGTCTACTAAGACTCTTGGCAACTTTGTCAAGGCCACTTTTGACTGTCTCTTGAAAACCTATG GTTTCTTGACTCCTGATTTCTGGACGGAGACTCGCTTTATCAAATCTCCTTTCCAAGAGTTCACTGATCTACTAGCAAAGCCAACAAAAACCCTTGTCCT TGAAGATGTGGAGAGAGTGGAGGCCTGA
AA sequence Show only first row Show all	>Potri.001G256800.1 pacid=42789053 polypeptide=Potri.001G256800.1.p locus=Potri.001G256800 ID=Potri.001G256800.1.v4.1 annot-version=v4.1 MADRGAGGERGGDRGAFRRGFGGPRGERGGRGGRRRARRDEEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEYQIIDTLVGPGMKDEVMKITPVQKQ TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ FAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPDFWTETRFIKSPFQEFTDLLAKPTKTLVLEDVERVEA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58684			Ribosomal protein S5 family pr...		Potri.001G256800 [exp]	0	1
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Potri.018G065300 [exp]	2.00	0.9869
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.011G079500 [exp]	2.82	0.9842	Lhcb1-1,Pt-LHB1.2
AT4G39230			NmrA-like negative transcripti...		Potri.013G104000 [exp]	3.87	0.9798
AT1G30380		PSAK	photosystem I subunit K (.1)		Potri.018G027600 [exp]	4.58	0.9839	Pt-PSAK.1
AT1G74730			Protein of unknown function (D...		Potri.012G070600 [exp]	5.65	0.9835
AT3G47430		PEX11B	peroxin 11B (.1)		Potri.001G124400 [exp]	6.32	0.9721
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Potri.016G079600 [exp]	6.92	0.9700
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.010G087300 [exp]	7.74	0.9790
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Potri.011G126700 [exp]	9.16	0.9709
AT2G30570		PSBW	photosystem II reaction center...		Potri.002G044300 [exp]	9.48	0.9755

Compare expression of checked genes

Potri.001G256800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.