Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37860 109 / 7e-27 SPT2 chromatin protein (.1) AT2G22720 70 / 7e-13 SPT2 chromatin protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009700 [exp] 130 / 8e-34 AT2G22720 166 / 2e-45 SPT2 chromatin protein (.1.2.3) Potri.005G148700 [exp] 124 / 1e-31 AT2G22720 177 / 1e-49 SPT2 chromatin protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019243 [exp] 89 / 4e-19 AT2G22720 140 / 1e-35 SPT2 chromatin protein (.1.2.3) Lus10011581 [exp] 89 / 4e-19 AT2G22720 139 / 3e-35 SPT2 chromatin protein (.1.2.3) Lus10021143 [exp] 84 / 1e-18 AT4G37860 66 / 7e-13 SPT2 chromatin protein (.1) Lus10007985 [exp] 56 / 5e-10 AT4G37860 56 / 1e-10 SPT2 chromatin protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08243 [poplar] [flax] SPT2 SPT2 chromatin protein
Representative CDS sequence Show only first row Show all	>Potri.001G257300.1 pacid=42788922 polypeptide=Potri.001G257300.1.p locus=Potri.001G257300 ID=Potri.001G257300.1.v4.1 annot-version=v4.1 ATGGCCGTCACCAAGGAGGAGCTGGAGTTTCTTGAAACAAGAAAGCTGCTTAAAGAACAAATCCGAAAACGAAATTGTCCTCATCATCTCTCGAAGCTTT CAAATTCTGATCATCATAAAACTAAAACTTACGGATCATTCTTTGGCCCTTCTCAACCGAGTATCGCTCCGAGAGTTATTCAAGAAAGCAAAAGCAAGCT ACAAACCCAGATTCCACAACATAGAGCAGTAAGTGCCGATATCCTTCTTTCTGCAATGGATAATCAGACCAAAGTCCAAAGGCTTCGACAGACAAGAGAC TACTCTTTCCTGTTCTCTGACGACAATAATCTGACGCCACCAGTTTCTAGTGCCACTCCTACACAAGCATCAGTGCCTTCAATAAAGCACTATGCAGATG TGAAGCGGTTAAGAAAATTCAATGACCCTGAATTGAAGCCGAAACAGCCAGCCCTGGCATGTTCATTGAAGCCTCTCACAAACAAGGCGGTAATGGAGAA AATCCCATCACGTATGTCCTTGCAATATCAGCCTCTCACAAACAAGGCGGTAATGGAGAAAATCCCATCACGTATGTCCTTGCAATATCAATGTACCGAT AAAAGAAAGCCTATCATCAAAGCAGTTCATCCAACAAAGCAGTTCGCGGGTAGCAACGATAGCAAGGGACCACGAAGACCCAACGATGCAACATTGAATC CCAAACAGCCAGTGAAGCCACATGAGATGAAAAACAAGCGAGTACGCGACAATATTTCATCGCCGGCTGTCTCTAATTTGCAAGATCATCGTCCCAAGAA AAGAAGACTTTCAGATGAAGAAGATGAATGTGAAGGTGAAAAGGCTCTTCTCATAATCAGAAAAATGTTCAACACCAAAAGGTTTGCTGGTCGTGACGAT AGAGATATAAAAATGGAGGCAAGCTTTGGAGACATAACGAAGGAAGAGAAAAGAAGTGAAAGGCTTGGCAGGAAAGAAGATCGAGAGCAACTCCGCCTAT TAGAAGAAAACGCGAGGCGCCAGCGGATGAGGAAGCATAATCAAGGAACAAAATTTTTGATATAG
AA sequence Show only first row Show all	>Potri.001G257300.1 pacid=42788922 polypeptide=Potri.001G257300.1.p locus=Potri.001G257300 ID=Potri.001G257300.1.v4.1 annot-version=v4.1 MAVTKEELEFLETRKLLKEQIRKRNCPHHLSKLSNSDHHKTKTYGSFFGPSQPSIAPRVIQESKSKLQTQIPQHRAVSADILLSAMDNQTKVQRLRQTRD YSFLFSDDNNLTPPVSSATPTQASVPSIKHYADVKRLRKFNDPELKPKQPALACSLKPLTNKAVMEKIPSRMSLQYQPLTNKAVMEKIPSRMSLQYQCTD KRKPIIKAVHPTKQFAGSNDSKGPRRPNDATLNPKQPVKPHEMKNKRVRDNISSPAVSNLQDHRPKKRRLSDEEDECEGEKALLIIRKMFNTKRFAGRDD RDIKMEASFGDITKEEKRSERLGRKEDREQLRLLEENARRQRMRKHNQGTKFLI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37860			SPT2 chromatin protein (.1)		Potri.001G257300 [exp]	0	1
					Potri.013G160350 [exp]	13.67	0.8164
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.006G269800 [exp]	17.32	0.8342
AT3G24255			RNA-directed DNA polymerase (r...		Potri.010G000101 [exp]	19.79	0.7725
AT3G15220			Protein kinase superfamily pro...		Potri.001G397600 [exp]	21.44	0.8365
AT4G20190			unknown protein		Potri.001G074300 [exp]	29.32	0.8038
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.014G115300 [exp]	32.00	0.7910
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Potri.013G083200 [exp]	32.87	0.7772
					Potri.001G020080 [exp]	39.30	0.8065
AT1G23230			unknown protein		Potri.010G108350 [exp]	40.79	0.8086
AT2G30000			PHF5-like protein (.1)		Potri.008G028300 [exp]	43.87	0.7634

Compare expression of checked genes

Potri.001G257300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.