Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20920 465 / 1e-164 translocation protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052800 [exp] 637 / 0 AT3G20920 451 / 5e-159 translocation protein-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030136 [exp] 524 / 0 AT3G20920 508 / 0.0 translocation protein-related (.1.2) Lus10009945 [exp] 518 / 0 AT3G20920 506 / 0.0 translocation protein-related (.1.2) Lus10014906 [exp] 516 / 0 AT3G20920 501 / 3e-179 translocation protein-related (.1.2) Lus10027362 [exp] 511 / 0 AT3G20920 498 / 4e-178 translocation protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03839 [poplar] [flax] Sec62 Translocation protein Sec62
Representative CDS sequence Show only first row Show all	>Potri.001G257500.1 pacid=42787875 polypeptide=Potri.001G257500.1.p locus=Potri.001G257500 ID=Potri.001G257500.1.v4.1 annot-version=v4.1 ATGAAGAAATCAGGAGGGGCAGCAGACAAGAAAAGGGTTCGAAGATCATCAGGAGCTGTACCAAATGGCACCAGAGATCTAAACTCTGATACCCCTCCTA GGAAACAAGCTGCAAAAAAAGATGTGTTTCAGTTGTTTGCCGAGAAGGTAAGAGATCACAAGGGTTTGGTTTCTCGTTGGGCTGTCTTACAAGAGACACG TGTTGAATATTTTAGAGGAAAGGATTTTGTAAGCTTTCTGAAAAATCATCCAGAGATTAAAGATATATTAGAGTCAAATAAGAATTTAGAGGTTGAAGAA ATTGTTGATACTTTATTAAGTAAGAACCTTTTAGTGCGTTGTGATCGTGTGGTGAAAACTGTTCGTCCTGGGAAGAAAAAGCTGTCTACCTGGCCAGCAC ATCTAGAGATCTTTCCTGATCAAGTGTTTTCAGAAAGTGATTCCTTTTTTGCGTGGACGTTCGTAAAACAGAGGCCGTTATGGCAGACACTCCTCTCACT TTCTTGGCCTGTGCTGACTCTTGCAATTTGCCTGTTTCCTATATACCCACATGGGTGCAAGCTATTAATCCTCTACTCTTGTGCTGGACTTCTTTTGCTT ATTTTCTCACTTCTTTCATTGAGAGCAACAGTATTCGGTGCTTTATACATCATTCTTGGAAAGCGTGTTTGGTTATTCCCTAACATCCTTGCTGAAGAAG CTACCTTGGGAGAATTATTCCGTTTATGGCCAAACAAGGATGAGGAGGAGAGGCCCAAGTGGACAACGAGGCTTTTCTATGCATTACTAGCTGTGCTCGT TATATTACTGCTGAGGCACCATGCTCCCGATGAAGCTGCCAGAGCAAGGTATCAGAAGCGGATGTCCAACATAATTGACGATGTTCTTGAGTGGTCTCCA AGTTTGGCGCTGTCTGGAATGATGGAGAAGCAGCCAACTTTGGTGAATGCCACAGAACCCAACGATTTTACAGATTCTGGTCAAACAGACTCGGAGAAGG TGCCTCCAGCAGGTGATGAAGGTGGAGAAACCATCTTGGAACAACACGAGGATGAAGAAATCAAAAACATAGAGGATGCCGCTGATCAACATCAGCATCA AGATCATATATGA
AA sequence Show only first row Show all	>Potri.001G257500.1 pacid=42787875 polypeptide=Potri.001G257500.1.p locus=Potri.001G257500 ID=Potri.001G257500.1.v4.1 annot-version=v4.1 MKKSGGAADKKRVRRSSGAVPNGTRDLNSDTPPRKQAAKKDVFQLFAEKVRDHKGLVSRWAVLQETRVEYFRGKDFVSFLKNHPEIKDILESNKNLEVEE IVDTLLSKNLLVRCDRVVKTVRPGKKKLSTWPAHLEIFPDQVFSESDSFFAWTFVKQRPLWQTLLSLSWPVLTLAICLFPIYPHGCKLLILYSCAGLLLL IFSLLSLRATVFGALYIILGKRVWLFPNILAEEATLGELFRLWPNKDEEERPKWTTRLFYALLAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSP SLALSGMMEKQPTLVNATEPNDFTDSGQTDSEKVPPAGDEGGETILEQHEDEEIKNIEDAADQHQHQDHI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20920			translocation protein-related ...		Potri.001G257500 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Potri.003G221000 [exp]	3.87	0.7283
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.005G228900 [exp]	9.38	0.7380	RER1.4
AT5G49880			mitotic checkpoint family prot...		Potri.003G000900 [exp]	14.28	0.7260
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.003G155800 [exp]	14.38	0.7410
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Potri.016G071500 [exp]	18.65	0.6886	NHL1.1
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.005G145900 [exp]	21.70	0.6713	Pt-CKA1.2
AT3G20920			translocation protein-related ...		Potri.009G052800 [exp]	25.45	0.6907
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	30.72	0.7283
AT5G25265			unknown protein		Potri.006G258800 [exp]	35.29	0.6882
AT4G39390		NST-K1, ATNST-K...	A. THALIANA NUCLEOTIDE SUGAR T...		Potri.007G077900 [exp]	49.83	0.7013

Compare expression of checked genes

Potri.001G257500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.