Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20890 356 / 8e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G66010 198 / 3e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053200 [exp] 431 / 7e-155 AT3G20890 353 / 1e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G101200 [exp] 233 / 2e-76 AT5G66010 344 / 2e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G269200 [exp] 44 / 9e-05 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009943 [exp] 366 / 4e-129 AT3G20890 328 / 9e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009942 [exp] 353 / 1e-123 AT3G20890 313 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030139 [exp] 352 / 3e-123 AT3G20890 315 / 2e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030140 [exp] 345 / 9e-121 AT3G20890 300 / 8e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Potri.001G258000.1 pacid=42789574 polypeptide=Potri.001G258000.1.p locus=Potri.001G258000 ID=Potri.001G258000.1.v4.1 annot-version=v4.1 ATGTTCTATAGAGGATATCCTGACGGTCCTGATGGACGTGAAATGGGTGCAAAACGTCAGCGGATGGTTGATCAGGGTCCTTCATTCTATGGTAATTCCC CTGGTTCAAGTTTTATGTACAACACACCTCCCTATGGATATGTTAGCCAGCCACCTCCGCCTTTCCCTGTTGTTCGCCTTCGTGGTCTTCCTTTTGACTG CACAGAAACTGATGTGGCTGAGTTCTTTCGTGGTTTGGACATAGTTGATGTTCTTTTTGTTCACAAGGGTGGTAAGTTCACTGGTGAAGCTTTTTGTGTT CTGGGGTATCCTCTTCAAGTTGATTTTGCACTTCAAAAGAACAGGCAGAACATGGGCAGGAGATATGTTGAGGTTTTTCGGAGTAAGAGGCAGGATTATT ACAAGGCAATAGCAAATGAAGTTTCAGAATCTCGTGGTTCACCACGACGAAATATCTCTAGGGCTAAATCTTACGATGAGGGAAAGGACTTAGCCGAACA TACAGGGGTATTACGATTGAGGGGGCTGCCATTTTCAGCTGGCAAGGATGACATAATGGAATTCTTTAAAGATTTTGTTTTATCTGAAGATTTGATTCAT ATTACGATGAATTCAGAGGGTAGGCCAACTGGGGAAGCCTTTGTGGAGTTTGCAAATGCAGAAGATTCTAAAGCAGCGATGGCCAAAGATAGGATGACTC TTGGGAGTCGTTATATAGAGCTGTTTCCCTCATCAATCGAGGAGTTGGATGAAGCGGTTTCAAGAGGCCGGTGA
AA sequence Show only first row Show all	>Potri.001G258000.1 pacid=42789574 polypeptide=Potri.001G258000.1.p locus=Potri.001G258000 ID=Potri.001G258000.1.v4.1 annot-version=v4.1 MFYRGYPDGPDGREMGAKRQRMVDQGPSFYGNSPGSSFMYNTPPYGYVSQPPPPFPVVRLRGLPFDCTETDVAEFFRGLDIVDVLFVHKGGKFTGEAFCV LGYPLQVDFALQKNRQNMGRRYVEVFRSKRQDYYKAIANEVSESRGSPRRNISRAKSYDEGKDLAEHTGVLRLRGLPFSAGKDDIMEFFKDFVLSEDLIH ITMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSIEELDEAVSRGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Potri.001G258000 [exp]	0	1
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.019G082400 [exp]	2.64	0.9067
AT3G12650			unknown protein		Potri.009G063700 [exp]	6.32	0.8527
AT1G04985			unknown protein		Potri.014G159600 [exp]	8.71	0.8960
AT5G01230			S-adenosyl-L-methionine-depend...		Potri.019G056300 [exp]	9.64	0.8886
AT5G18200			UTP:galactose-1-phosphate urid...		Potri.019G034400 [exp]	10.53	0.8329
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Potri.004G042200 [exp]	12.84	0.8371
AT5G61220			LYR family of Fe/S cluster bio...		Potri.009G079800 [exp]	12.96	0.8744
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.016G038900 [exp]	14.83	0.8774
AT1G73380			unknown protein		Potri.004G067200 [exp]	18.33	0.8571
AT5G46720			AIG2-like (avirulence induced ...		Potri.003G092600 [exp]	22.36	0.8477

Compare expression of checked genes

Potri.001G258000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.