Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19855 260 / 1e-88 AtRbcX2 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) AT4G04330 49 / 4e-07 AtRbcX1 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053300 [exp] 424 / 4e-153 AT5G19855 230 / 4e-77 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Potri.011G010300 [exp] 39 / 0.001 AT4G04330 209 / 6e-70 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009941 [exp] 271 / 1e-92 AT5G19855 221 / 1e-73 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10030141 [exp] 264 / 5e-90 AT5G19855 231 / 2e-77 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10002563 [exp] 243 / 2e-82 AT5G19855 202 / 1e-66 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10027363 [exp] 243 / 5e-82 AT5G19855 200 / 1e-65 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02341 [poplar] [flax] RcbX RbcX protein
Representative CDS sequence Show only first row Show all	>Potri.001G258100.1 pacid=42788876 polypeptide=Potri.001G258100.1.p locus=Potri.001G258100 ID=Potri.001G258100.1.v4.1 annot-version=v4.1 ATGGTGGGAGCTTTATCTGTAATGGGCTCATCTGTGGTGGATCCACACACCAGTCCATGTTTGTGTTTGGATTCGCTGCCCACAACTAATATTGGTCTTA AGAACAGTGGAGATTTGGCTTTGCAAAGGAGTTCAATAAAGAGAAAGCAGTTAACAAGGCCAGGATCATTGGAACTGGGGAGTTCTTTCGTGGACTCATG GCATGATTGGAGGCTCTCATCAAAAGCTATTTCAGGAATCGTTAGTAAGAGCTCAAGGAAACAGAGAAAGGATAGGGGACTTGTGATTGTCAGCGAGTTG GCGGGGCAATATGAGGATAGTTTTGAGGATGTCAAAACGCAACTACTCAATTATTTCACATACAAAGCTGTAAGGACTGTACTTAACCAGCTCTACGAGA TGAATCCAACGCAATATACATGGTTTTATAATTTTGTTGCGCATAATAAGCCAGGAGATGGCAAGCGTTTCCTTCGCGCTCTCGTGAAGGAGAAGCAGGA CCTTGCAGAAAGAGTGATGGTCACACGCCTTCACCTGTATGGGAAATGGATTAAGAAATGTGATCATGCTGAGATATATAAAGAAATCTCTGATGAGAAC TTGGAGTTGATGCGTGAACGGCTCAAAGAGACTGTGATATGGCCATCAGATGACACAAACACAGAGAAGATTGGCTGA
AA sequence Show only first row Show all	>Potri.001G258100.1 pacid=42788876 polypeptide=Potri.001G258100.1.p locus=Potri.001G258100 ID=Potri.001G258100.1.v4.1 annot-version=v4.1 MVGALSVMGSSVVDPHTSPCLCLDSLPTTNIGLKNSGDLALQRSSIKRKQLTRPGSLELGSSFVDSWHDWRLSSKAISGIVSKSSRKQRKDRGLVIVSEL AGQYEDSFEDVKTQLLNYFTYKAVRTVLNQLYEMNPTQYTWFYNFVAHNKPGDGKRFLRALVKEKQDLAERVMVTRLHLYGKWIKKCDHAEIYKEISDEN LELMRERLKETVIWPSDDTNTEKIG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.001G258100 [exp]	0	1
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016900 [exp]	1.00	0.9791
AT1G50020			unknown protein		Potri.009G084800 [exp]	1.41	0.9750
AT1G79510			Uncharacterized conserved prot...		Potri.010G173000 [exp]	2.44	0.9616
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.006G087200 [exp]	4.00	0.9556	Pt-DFR1.3
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135001 [exp]	5.91	0.9518
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.003G009300 [exp]	6.70	0.9471
AT4G25040			Uncharacterised protein family...		Potri.017G062100 [exp]	7.34	0.9500
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Potri.017G032766 [exp]	8.48	0.9475
AT1G14780			MAC/Perforin domain-containing...		Potri.008G136401 [exp]	9.38	0.9363
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032700 [exp]	9.53	0.9480

Compare expression of checked genes

Potri.001G258100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.