Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12850 507 / 2e-171 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT2G41900 478 / 5e-160 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G58620 340 / 5e-108 C3HZnF zinc finger (CCCH-type) family protein (.1) AT2G40140 324 / 4e-102 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT3G55980 317 / 1e-99 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1) AT2G25900 181 / 1e-51 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT5G07500 177 / 1e-50 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G19810 177 / 1e-49 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT4G29190 176 / 2e-49 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G03790 167 / 1e-45 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053500 [exp] 832 / 0 AT5G12850 476 / 5e-160 CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 530 / 2e-180 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 525 / 6e-178 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.016G053700 [exp] 504 / 7e-170 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 503 / 8e-170 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 503 / 1e-169 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G046800 [exp] 350 / 1e-110 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.001G252600 [exp] 345 / 1e-108 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.008G069400 [exp] 333 / 9e-105 AT2G40140 557 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028970 [exp] 330 / 2e-103 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 329 / 2e-103 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10019709 [exp] 303 / 5e-92 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10040662 [exp] 189 / 2e-53 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1) Lus10035006 [exp] 181 / 1e-50 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 180 / 3e-50 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10017708 [exp] 167 / 1e-46 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033665 [exp] 166 / 6e-46 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 164 / 7e-45 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10035413 [exp] 45 / 0.0001 AT2G41370 699 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.001G258400.2 pacid=42791858 polypeptide=Potri.001G258400.2.p locus=Potri.001G258400 ID=Potri.001G258400.2.v4.1 annot-version=v4.1 ATGTGTCAATGGCCTAATCAGTCAAAAAAATCGCAGACTATGACTCCATTGTCTCCCATGGAAAGCAATTCTTTTACTGAAGATATGAGCTACTCGATTG ATACCGAGCATTCTTTTTCCTCGTTGCTTGAGTTTGCGGCAGGTAATGACGTCGAGGGTTTCAGGCGATCAGTGTTTGATGAATCCGAGGTTAAGCAGGT TGGACTATGGTACGGTCGCCATGGGGGATCGAGGAAGATGGTTCTCGAGCAGAGAACCCCTTTAATGATTGCTGCTAAATATGGCAGTGTTGACATTGTG AAACTAATTCTTTCTCTACCTGAGGTAGATATAAATTTCTGTTGTGGCCCGGATAAGAGCACTGCTCTTCATTGTGCTGTTTCTGGTGGATCTGTTAATG CCATCTCTGTTGTCAAGTTGCTATTACTTGCAGGTGCTGATACTAATGCCTTTGATGCCAATGGTTGTCGCCCAATTGATGTTATCGTTGCTCCCTCAAA ATTTCCTCACCTGAAAATTGCACTTGAAGAGCTCTTGAAAAATGGTTCTGTCTGTCAATGGGATATGATGCCAGTTTCATGTCCTAGTTTGAGATCCAGT TCACCTTCTCTGTCATCATTGATTGATGAAGGTTCCTCGTCCTCTCCCTCGGGCTCTATATTGTCGCCAGTTACCCGTATGCCTAACGATGTACATTCTT CTGCTAAGAAAGGATACCCTGTTGATCCAACTATTCCTGATATTAAGAACAGTGTTTACGCTAGCGATGAGTTTAGGATGTTCTCCTTCAAGATCCAACG TTGTTCCAGGGCATATGCCCATGATTGGACCGAGTGTCCTTTTGTTCATCCAGGTGAGAATGCAAGGAGAAGGGACCCAAGGAAGTTCCATTACAGTTGT GCACCATGTCCAGGTCACAGGAATGGGACATGTAGGCGTGGGGATTTGTGTGAATATGCTCATGGGATTTTCGAGAGCTGGCTACACCCTACCCAATACA AGACTCGACTTTGCAAGGAAGGCACGAATTGCATGCGTCGAGTGTGTTTCTTTGCTCACACATCAAATGAACTGAGATCTCTGAATATGTCTACTGGAGC TGCATCCTCTAAAGTAGATGTTATGGATTTCACCACGGCCTCGAAGTTGTTGCCTAGCTCCCCTTCAGCAGTTTCCTCGACGTCACCTTCTACATTTAAT CCACTGAAGCATCTTTCAAGCAACAGTTCACACCCATCTGTGCCTTGGCCTCAGCAAACTATCCCAAATTTGCATAGCAGTCTCCAAGCAAGCCGTCTGA GAAGTTCTCTCAATGCAAGAGACATTTCATCCGAGGAGCTTAATGGATTGCGGGATTTTGCATTCCAGCAACATCTGCCCCTAAACGAGCCATCCTCTTT CTCTCAGCTACAGTACAATGGTTCCTATACCGATCTTTTTTCTCCTTCAAACACCCTGAACCACTCAAATCTAGACAAGATTTTCTATGCAAATGTCTCA TCTCCTCAGCATCCTGAGCAACTGGGAGGTGTTGCATCTGTTTTCTCTCCCACATATTCGTCAGCAGCTCTTAATCAACAGCAGCAGCATCAGAAAAGCA AGGCATCTCGAATTCAGGGGATATCATCTTATATCAATTATCCTGTGTCCTCTTTGGGCTCTCAACTATCTGCTCATGTTCGCCAGGAGAAGATGTTGCA ACAATTACAAAGCAGCCTTCTCTCACAGAAGTTTAGTTCTAAGCCATCATATGACCTTGGATCCAATGGTACAAATTCAGGGTCAATATGGAAATCTGAG AACAGGAATGTAGATAGGTTTATACAGGCGGACGAAATGGGTCAGCCACGCACATCATGTTCAATTGAGCACGTTGGAGAGGAACCCGATGTGTCATGGG TTCATTCAATGTTAAAGGACTCACCATCTGAGACAAACGAGGCAACTGCTATTCCAGTCTCGGCCATCCTTGATGGCTCTACTTCAAATCCTCACATCGA ATCCAGTGATTACGTGGCTTTGCAAGCCTGGCTTGACGGGTTGCAGCTTGATCAGAACGTTGCTTAG
AA sequence Show only first row Show all	>Potri.001G258400.2 pacid=42791858 polypeptide=Potri.001G258400.2.p locus=Potri.001G258400 ID=Potri.001G258400.2.v4.1 annot-version=v4.1 MCQWPNQSKKSQTMTPLSPMESNSFTEDMSYSIDTEHSFSSLLEFAAGNDVEGFRRSVFDESEVKQVGLWYGRHGGSRKMVLEQRTPLMIAAKYGSVDIV KLILSLPEVDINFCCGPDKSTALHCAVSGGSVNAISVVKLLLLAGADTNAFDANGCRPIDVIVAPSKFPHLKIALEELLKNGSVCQWDMMPVSCPSLRSS SPSLSSLIDEGSSSSPSGSILSPVTRMPNDVHSSAKKGYPVDPTIPDIKNSVYASDEFRMFSFKIQRCSRAYAHDWTECPFVHPGENARRRDPRKFHYSC APCPGHRNGTCRRGDLCEYAHGIFESWLHPTQYKTRLCKEGTNCMRRVCFFAHTSNELRSLNMSTGAASSKVDVMDFTTASKLLPSSPSAVSSTSPSTFN PLKHLSSNSSHPSVPWPQQTIPNLHSSLQASRLRSSLNARDISSEELNGLRDFAFQQHLPLNEPSSFSQLQYNGSYTDLFSPSNTLNHSNLDKIFYANVS SPQHPEQLGGVASVFSPTYSSAALNQQQQHQKSKASRIQGISSYINYPVSSLGSQLSAHVRQEKMLQQLQSSLLSQKFSSKPSYDLGSNGTNSGSIWKSE NRNVDRFIQADEMGQPRTSCSIEHVGEEPDVSWVHSMLKDSPSETNEATAIPVSAILDGSTSNPHIESSDYVALQAWLDGLQLDQNVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12850	C3HZnF	PEI1	CCCH-type zinc finger protein ...		Potri.001G258400 [exp]	0	1
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.004G118100 [exp]	1.00	0.9014
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	2.82	0.8945
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	7.48	0.8642
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.008G073300 [exp]	9.21	0.8765
AT5G56040			Leucine-rich receptor-like pro...		Potri.012G088100 [exp]	9.38	0.8547
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Potri.013G066200 [exp]	9.38	0.8789
AT4G24910			Protein of unknown function (D...		Potri.015G096900 [exp]	11.61	0.8627
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.015G033600 [exp]	12.24	0.8614	MYB.38,MYB090
AT5G40470			RNI-like superfamily protein (...		Potri.017G069800 [exp]	14.00	0.8706
AT5G60580			RING/U-box superfamily protein...		Potri.016G022900 [exp]	17.32	0.7907

Compare expression of checked genes

Potri.001G258400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.